Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32272 387 / 1e-135 Nucleotide/sugar transporter family protein (.1.2) AT4G31600 110 / 5e-28 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT2G13650 67 / 1e-12 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G77610 59 / 7e-10 EamA-like transporter family protein (.1) AT1G21870 58 / 1e-09 GONST5 golgi nucleotide sugar transporter 5 (.1) AT5G05820 50 / 5e-07 Nucleotide-sugar transporter family protein (.1) AT2G28315 50 / 6e-07 Nucleotide/sugar transporter family protein (.1) AT1G21070 49 / 2e-06 Nucleotide-sugar transporter family protein (.1) AT1G76670 47 / 6e-06 Nucleotide-sugar transporter family protein (.1) AT1G07290 47 / 1e-05 GONST2 golgi nucleotide sugar transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006645 [exp] 448 / 2e-159 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10020119 [exp] 107 / 4e-27 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 107 / 9e-27 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10024126 [exp] 78 / 4e-16 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10029663 [exp] 64 / 4e-11 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10042700 [exp] 63 / 5e-11 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10025645 [exp] 60 / 4e-10 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1) Lus10036606 [exp] 59 / 2e-09 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10035824 [exp] 58 / 2e-09 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127400 [exp] 462 / 2e-165 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 401 / 5e-141 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G026600 [exp] 400 / 2e-140 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G270700 [exp] 110 / 3e-28 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 103 / 1e-25 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 71 / 1e-13 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 68 / 1e-12 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G177200 [exp] 61 / 2e-10 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 57 / 6e-09 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1) Potri.004G211900 [exp] 52 / 2e-07 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10038090 pacid=23163713 polypeptide=Lus10038090 locus=Lus10038090.g ID=Lus10038090.BGIv1.0 annot-version=v1.0 ATGTTCAATAAAGCAGCCCTTTCTTCATACAGCTTCCCTTATGCAAACGTCATCACGCTTTTTCAGATAATATGCTCGTGCATTTTACTCTATGCAATGA AATATTGGAAGCTCGTATCATTTACAGTTAGTGAACGGCCAACCTCTACTACCAACGCAGCTAAACTGGTACCCCTGAGGACATTAGCTCGAACAGTTCC TCTAGCAATTTCATATTTGCTTTACATGCTAGTCACCATGGAATCTGTGCGTGGCATTAATGTCCCCATGTATGCCACCCTCAGAAGAACTACAGTGGCT TTCACCATGGTAGTTGAGTATCTCTTGACAGGGAAGAAACATTCATTGCCTGTTATTGGCAGTGTGGGTATAATTATACTTGGAGCATTCATTGCTGGAG CTCGAGACTTGTCATTTGATGCCTACAGCTATTCTGTCGTCTTCATTGCAAATATCTGCACAGCAATATATCTTGCTTCGATTGCTCGGATTGGAAAATC TAGTGGCCTCAATAGCTTTGGCCTCATGTGGTGCAACGGAATTATATGTTTACCAGTATTACTAGTCTGGACATCAGTCAGTGGAGATCTAGGATCACTA AAGAACTTTCCCTATCTGTTATACCCAGGATTTCAGGTCGTGATGCTTCTATCATGTATCCTGGCTTTCTTGATCAATTACTCTGTGTTCTTAAACACAA CAATTAATTCAGCATTGACACAAACAATCTGTGGTAATTTGAAGGATGTTTTCACCATTGGACTAGGGTGGATGTTGTTCGGGGGTCTTCCATTTGACCT GATGAATATCGTGGGTCAGACTCTAGGTTTCGTTGGGTCTATATTGTACGCATACTGTAAACTCAAGGGAAAATAA
AA sequence Show only first row Show all	>Lus10038090 pacid=23163713 polypeptide=Lus10038090 locus=Lus10038090.g ID=Lus10038090.BGIv1.0 annot-version=v1.0 MFNKAALSSYSFPYANVITLFQIICSCILLYAMKYWKLVSFTVSERPTSTTNAAKLVPLRTLARTVPLAISYLLYMLVTMESVRGINVPMYATLRRTTVA FTMVVEYLLTGKKHSLPVIGSVGIIILGAFIAGARDLSFDAYSYSVVFIANICTAIYLASIARIGKSSGLNSFGLMWCNGIICLPVLLVWTSVSGDLGSL KNFPYLLYPGFQVVMLLSCILAFLINYSVFLNTTINSALTQTICGNLKDVFTIGLGWMLFGGLPFDLMNIVGQTLGFVGSILYAYCKLKGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32272			Nucleotide/sugar transporter f...		Lus10038090 [exp]	0	1
AT1G67850			Protein of unknown function (D...		Lus10006472 [exp]	10.4	0.8450
AT4G12760			unknown protein		Lus10001181 [exp]	14.6	0.8661
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10026817 [exp]	15.9	0.8561
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	19.1	0.8323
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	23.3	0.8447
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10021161 [exp]	26.5	0.8152
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	37.1	0.8359
AT1G04555			unknown protein		Lus10023715 [exp]	37.3	0.8320
AT5G03905			Iron-sulphur cluster biosynthe...		Lus10014201 [exp]	38.1	0.8133
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	38.9	0.8306

Compare expression of checked genes

Lus10038090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.