Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52600 181 / 5e-57 MYB AtMYB82 myb domain protein 82 (.1) AT5G40330 147 / 1e-43 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1) AT5G14750 144 / 7e-43 MYB WER1, WER, AtMYB66 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) AT3G27920 144 / 2e-42 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT5G35550 143 / 2e-41 MYB ATTT2, TT2, AtMYB123 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) AT1G22640 135 / 2e-38 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT3G13540 132 / 1e-37 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT1G66370 132 / 2e-37 MYB ATMYB113 myb domain protein 113 (.1) AT5G54230 133 / 4e-37 MYB ATMYB49 myb domain protein 49 (.1) AT4G38620 132 / 4e-37 MYB AtMYB4 myb domain protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006647 [exp] 444 / 5e-160 AT5G52600 186 / 6e-59 myb domain protein 82 (.1) Lus10000470 [exp] 139 / 9e-40 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 139 / 2e-39 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10039173 [exp] 138 / 2e-39 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 135 / 3e-38 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10000411 [exp] 132 / 5e-37 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10009448 [exp] 131 / 1e-36 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10015369 [exp] 132 / 2e-36 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10016948 [exp] 130 / 2e-36 AT4G09460 301 / 1e-103 myb domain protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G127700 [exp] 196 / 1e-62 AT5G52600 201 / 2e-65 myb domain protein 82 (.1) Potri.006G066400 [exp] 190 / 3e-60 AT5G52600 193 / 3e-62 myb domain protein 82 (.1) Potri.006G221500 [exp] 147 / 4e-43 AT5G35550 174 / 2e-53 TRANSPARENT TESTA 2, MYB DOMAIN PROTEIN 123, Duplicated homeodomain-like superfamily protein (.1) Potri.003G079100 [exp] 143 / 1e-42 AT3G13540 168 / 1e-52 myb domain protein 5 (.1) Potri.012G080400 [exp] 144 / 2e-42 AT5G14750 210 / 3e-69 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.001G169600 [exp] 142 / 8e-42 AT5G14750 167 / 9e-53 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.018G005300 [exp] 146 / 2e-41 AT1G22640 186 / 9e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.006G275900 [exp] 144 / 2e-41 AT1G22640 186 / 1e-57 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.015G075600 [exp] 140 / 3e-41 AT5G14750 189 / 6e-61 WEREWOLF 1, WEREWOLF, myb domain protein 66 (.1) Potri.001G005100 [exp] 143 / 4e-41 AT3G13540 247 / 1e-81 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038092 pacid=23163691 polypeptide=Lus10038092 locus=Lus10038092.g ID=Lus10038092.BGIv1.0 annot-version=v1.0 ATGGATGATGATACTCAACAAGTGAAAAAAAGAGGGTTGTGGAAGCCTGAGGAAGACCTCATCCTCAGAATGTACGTTCAGACTCACGGTGAAGGCAACT GGGCTACTGTTTCTGCTAAATCAGGCTTGTCTTCTTCTTCTTCTTCTTCTTCCCAACTGGACTGGGCTACCTCTTCCTTCTCTCTTTGCTACTCGTACAC TAACGCTGGTTTTACAGGATTGAAGAGAGGAGGTAAGAGCTGCAGACTTAGGTGGAAGAATTACTTGAGACCAAACATCAAACGAGGCGACATGTCAGAC CAGGAACAAGACCTCATCATTCGAATGCACAAGCTTGTCGGAAATCGGTGGTCTCTTATCGCTGGCCGGCTTCCAGGACGCACCGACAACGAAGTGAAGA ACTACTGGAACACCCATTTAAACAACAAGAGGCTAAGCCGAGTCAACAAGAGACCAAAGATGATGAACTCTAACAAGAATCACAGACGCAGCTTCAAGGA CGAGAAACCTCCTCAAGATTCCCGGCTGGTAAGCGGTATAAAGCCTACATTCACAATAGTAGAAGACAACCAAACCACAGCTACCGATGAAGCGTGGATT GAAGCTGCACGGAACATGAACAGTTACCTCATTGAGTCTCCAATGCCAGCGGCAGCAAGGGATACAGCCTTGATGCTAGACACTAATGATCCTTTCATGC CTTATTTGGATCCCTACCTATTTTTTCCACAGCCATTCGAAAGCTTCATTGGAGACAGAGACGCATTCTTTCAATAA
AA sequence Show only first row Show all	>Lus10038092 pacid=23163691 polypeptide=Lus10038092 locus=Lus10038092.g ID=Lus10038092.BGIv1.0 annot-version=v1.0 MDDDTQQVKKRGLWKPEEDLILRMYVQTHGEGNWATVSAKSGLSSSSSSSSQLDWATSSFSLCYSYTNAGFTGLKRGGKSCRLRWKNYLRPNIKRGDMSD QEQDLIIRMHKLVGNRWSLIAGRLPGRTDNEVKNYWNTHLNNKRLSRVNKRPKMMNSNKNHRRSFKDEKPPQDSRLVSGIKPTFTIVEDNQTTATDEAWI EAARNMNSYLIESPMPAAARDTALMLDTNDPFMPYLDPYLFFPQPFESFIGDRDAFFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52600	MYB	AtMYB82	myb domain protein 82 (.1)		Lus10038092 [exp]	0	1
AT4G00820		IQD17	IQ-domain 17 (.1)		Lus10023233 [exp]	1.0	0.9706
AT5G62710			Leucine-rich repeat protein ki...		Lus10033104 [exp]	2.0	0.9494
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10018655 [exp]	5.3	0.9380
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10038189 [exp]	5.7	0.9005
AT4G37130			hydroxyproline-rich glycoprote...		Lus10022470 [exp]	6.5	0.9296
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10007719 [exp]	8.8	0.9202
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Lus10041730 [exp]	9.5	0.9288
AT1G15320			unknown protein		Lus10035916 [exp]	9.7	0.9112
AT3G48970			Heavy metal transport/detoxifi...		Lus10039225 [exp]	10.9	0.9124
AT1G11120			unknown protein		Lus10039796 [exp]	12.6	0.9308

Compare expression of checked genes

Lus10038092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.