Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20230 92 / 4e-22 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT1G72230 90 / 2e-21 Cupredoxin superfamily protein (.1) AT2G32300 89 / 2e-20 UCC1 uclacyanin 1 (.1) AT3G17675 84 / 4e-20 Cupredoxin superfamily protein (.1) AT5G26330 84 / 3e-19 Cupredoxin superfamily protein (.1) AT5G07475 83 / 1e-18 Cupredoxin superfamily protein (.1) AT2G25060 80 / 1e-17 AtENODL14 early nodulin-like protein 14 (.1) AT2G26720 77 / 1e-16 Cupredoxin superfamily protein (.1) AT2G31050 76 / 7e-16 Cupredoxin superfamily protein (.1) AT4G31840 74 / 2e-15 AtENODL15 early nodulin-like protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006657 [exp] 343 / 2e-117 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10019405 [exp] 164 / 2e-47 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2) Lus10008720 [exp] 100 / 5e-25 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10020944 [exp] 98 / 5e-24 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10035911 [exp] 96 / 3e-23 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10025752 [exp] 96 / 6e-23 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10006680 [exp] 89 / 5e-21 AT5G26330 98 / 6e-26 Cupredoxin superfamily protein (.1) Lus10007027 [exp] 89 / 7e-21 AT5G26330 100 / 5e-27 Cupredoxin superfamily protein (.1) Lus10006682 [exp] 88 / 2e-20 AT2G32300 95 / 1e-24 uclacyanin 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G129200 [exp] 117 / 5e-31 AT2G32300 94 / 9e-23 uclacyanin 1 (.1) Potri.006G067300 [exp] 116 / 3e-30 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G067400 [exp] 100 / 3e-25 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.001G192100 [exp] 97 / 1e-23 AT5G20230 100 / 2e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.002G101300 [exp] 95 / 5e-23 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1) Potri.018G129400 [exp] 92 / 7e-22 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.010G089900 [exp] 91 / 1e-21 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 90 / 2e-21 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.002G101200 [exp] 91 / 3e-21 AT1G72230 129 / 2e-37 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 89 / 4e-21 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10038098 pacid=23163910 polypeptide=Lus10038098 locus=Lus10038098.g ID=Lus10038098.BGIv1.0 annot-version=v1.0 ATGGTGGCGATTCGATCAAACAGATTGGCAGTTGCAGCCATAGTTATCGCTGCACTTGTCCAATTCTCCGCTGCTCAGACCACTTACACCGTCGGAAACA CCATGGGATGGGCCATCCCTCAGGGCGGCGCTTCTGCTTATTCCAGCTGGGCCGCCAACAATTCTTTTGCCCTCGGCGACATTCTTGTGTTCAATTTTGC TGCGGGAGCTCACGACGTGACCAAAGTTAGCAAAGCAGACTACGACTCCTGCACCGGAACAACTCCCTTGATGACTTCCACTACAAGTCCCGCTAGAGTT ACCTTGAACTCCTCGGGGGAGCACTACTTCATCTGTACCGTCCCCGGCCACTGCAACGCCGGTCAGAAGCTCACTGTTAACGTCCTAGCTTCAACTTCCT CCTCGCCATCCCCTGCTCCAACGGCTTCTCCTCCTCGCAGAGCTCTTTCCCCTGCACCTTCTACTTCTGCTCCTTCCCCTACAGCTTCTTCTTCTGCTCC TTCCCCTTCTTCAACAGTCACCGCTCCCACTCCTTCCACTACCCCGGTTGCCGGAGATGGTCCCTCGTCTGCACCCGCACCGTCTTCCAGGCCGCCTATG ACCTACACAGTCGGTGACTCCTTTGGGTGGAATATTCCAACCAGCGGTTCCATCTTCCGGGACTGGGCCGCCGGCAAGGACTTCATGGTCGGTGACATCC TCGTATTCAACTACGCCGCCGGAGCACACAATGTGGCAGAGGTGAGCAGCGACGGCTACACGGCGTGCACTACGGCCAACCCGATCTCTTTGGACAGCAA CCCACCAACCAGAATTACACTCACTACTCCCGGCGAGCATTTCTACATATGTGCCATTACCGGACATTGCACGGCCGGGCAACAGCTCTCAATCAATGTC ACGGGCCCCACCGGTACCACCTCTGGTTCTCCGTCCGGATCAACTACCCCGTCCCCGCCGGGAGATTCCAGCTCTGCCACGACTGTCGGAGTGTCAGCTG CTGCGTTTTTGTCCGTGTTTGTAGCTATGTTGTTATAG
AA sequence Show only first row Show all	>Lus10038098 pacid=23163910 polypeptide=Lus10038098 locus=Lus10038098.g ID=Lus10038098.BGIv1.0 annot-version=v1.0 MVAIRSNRLAVAAIVIAALVQFSAAQTTYTVGNTMGWAIPQGGASAYSSWAANNSFALGDILVFNFAAGAHDVTKVSKADYDSCTGTTPLMTSTTSPARV TLNSSGEHYFICTVPGHCNAGQKLTVNVLASTSSSPSPAPTASPPRRALSPAPSTSAPSPTASSSAPSPSSTVTAPTPSTTPVAGDGPSSAPAPSSRPPM TYTVGDSFGWNIPTSGSIFRDWAAGKDFMVGDILVFNYAAGAHNVAEVSSDGYTACTTANPISLDSNPPTRITLTTPGEHFYICAITGHCTAGQQLSINV TGPTGTTSGSPSGSTTPSPPGDSSSATTVGVSAAAFLSVFVAMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G45063			copper ion binding;electron ca...		Lus10038098 [exp]	0	1
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10022722 [exp]	2.0	0.9594
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	3.9	0.9538
AT5G44390			FAD-binding Berberine family p...		Lus10001965 [exp]	4.9	0.9520
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10033429 [exp]	4.9	0.9341
AT1G70170		MMP	matrix metalloproteinase (.1)		Lus10029207 [exp]	7.3	0.9579
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024076 [exp]	9.2	0.9550
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10035929 [exp]	12.0	0.9406
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10040179 [exp]	17.1	0.9340
AT1G47530			MATE efflux family protein (.1...		Lus10026323 [exp]	17.3	0.9299
AT5G10530			Concanavalin A-like lectin pro...		Lus10020456 [exp]	19.1	0.9552

Compare expression of checked genes

Lus10038098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.