Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48450 818 / 0 SKS3 SKU5 similar 3 (.1) AT4G12420 735 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 705 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 679 / 0 SKS2 SKU5 similar 2 (.1) AT1G21860 485 / 2e-166 SKS7 SKU5 similar 7 (.1) AT1G21850 484 / 5e-166 SKS8 SKU5 similar 8 (.1) AT4G22010 483 / 1e-165 SKS4 SKU5 similar 4 (.1) AT1G76160 480 / 2e-164 SKS5 SKU5 similar 5 (.1) AT1G55560 479 / 3e-164 SKS14 SKU5 similar 14 (.1) AT3G13390 479 / 4e-164 SKS11 SKU5 similar 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025860 [exp] 1051 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10028921 [exp] 747 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 745 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 743 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 740 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031722 [exp] 696 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10031143 [exp] 694 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 659 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 657 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G177700 [exp] 917 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.003G112700 [exp] 756 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 745 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.012G126400 [exp] 704 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 699 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.002G021000 [exp] 519 / 7e-180 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.005G247700 [exp] 495 / 2e-170 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.008G032100 [exp] 489 / 8e-168 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.002G013700 [exp] 486 / 5e-167 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 482 / 2e-165 AT5G66920 822 / 0.0 SKU5 similar 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10038239 pacid=23158444 polypeptide=Lus10038239 locus=Lus10038239.g ID=Lus10038239.BGIv1.0 annot-version=v1.0 ATGCAAAGTCCACTCCTTATATTGCTGCTGCTACTGCTGACGCCCACAACTAGTTTAGCAGGAGACCCTTATGTCTTCTTCGATTGGACCGTCTCCTACA TCTCCGCTTCTCCTCTTTCCCTCAAACAACAGCTTAGCACGAGAATTGGGTTCTTGCTACAGGTGATTGGCATCAATGGGCAATTCCCAGGACCCGTTCT TAACGTCACTACAAACTGGAACGTTGTTGTTAATGTCAAGAACCAGCTGGATGAGCCACTGCTTCTTACTTGGAATGGAATACAGCACAGGAAGAACTCA TGGCAAGATGGTGTTCCGGGGACTAATTGTCCCATCCCTGCTGGATGGAACTGGACTTATCAGTTCCAGGTGAAGGATCAGATTGGGAGTTTCTTCTACT TCCCTTCCTTGAGTTTCCAGCGAGCTGCTGGAGGCTATGGTGGGATCATTGTCAACAATAGGGAAGTTATTGCCTTGCCTTTTCCATTGCCTGACGGAGA TATCACCCTCTTCATTGGTGACTGGTACTCCAGAAGACATAAGGATTTAAGGAAAGATGTTGAAAATGGGAAGAATCTTGGTCCTCCTGATGGAATCCTC ATGAATGGATTTGGTCCGTACAGGTATGATCAAGCACTCGTCCAAGAAGGCACTACTTACCAGATAATAAGTGTTGAACCCGGAAAGACGTATCGTTTCC GTGTGCATAATGTGGGGATATCAACCACCTTGAACTTTAGAATACAAAATCATAACTTACTTCTTGTGGAGACAGAAGGTTCGTATACAGTCCAGCAAAA CTACACAAACATGGATATCCATGTGGGGCAGTCATATTCATTCCTAGTGTCGATGGATCAGAATGCTAGCACTGATTATTACATCGTTGCCAGTCCGAGA TATGTTAACTCATCTACCTGGAACAAAGCTTCTGGGGTTAGCATCCTGCACTACTCCAACTCCCAGGGGCCTGCTTCAGGTCCTCTTCCTGATCCTCCTA ATGCATACGATACGTTTTTCTCAATGAATCAAGCAAGATCCATAAGATCAAATGTATCTGCTGGTGCTGCTCGCCCGAATCCACAGGGGTCTTTCAAATA TGGCCAGATTACAGTGACAGATGTATATGTGATTGCCAATAGACCAGCAGAGATGATAAATGGAAAATGGATGACCACTCTTAATGGCATTTCTTACTTG CAACCTTCAACGCCTTTGACGCTTGCCCAGCAATACAATATTCCTGGAATCTATAAGCTCGACTTCCCCAATCAGATGATGAATAGACCTTCAAAGCTAG ATACTTCTCTAATAAATGGTACTTTCAAAGGTTTTACTGAGATCATATTCCAGAATAATGATACCACTGTCCAGAGCTATCATATGGACGGATATGCTTT CTTTGTAGTGGGTATGGATTTTGGAGTGTGGACAGATAATAGCAGAGGCACCTACAACAAATGGGATGGGGTTGCTCGCAGCACGATCCAGGTATTCCCT GGAGCTTGGACTGCTGTCCTGGTATACCTAGACAATGCCGGGATGTGGAATCTTCGTGCTGAGAATCTGGACTCATGGTATCTAGGCCAGGAAGTGTATG TAAGCGTAGTAAACCCAGAGGAAGACAAAGGCGAGTTTGGTCTGCCAGATAACGCTATATACTGTGGCTTATTGTCACATTTACAGAATTCCCCCCATGT TGTCCTTTTTACAAATGGCCAGGGACCAAGCTCAAAGATTCAGGTTCTCCGCAGCATCATCTGTTTCAAGTAA
AA sequence Show only first row Show all	>Lus10038239 pacid=23158444 polypeptide=Lus10038239 locus=Lus10038239.g ID=Lus10038239.BGIv1.0 annot-version=v1.0 MQSPLLILLLLLLTPTTSLAGDPYVFFDWTVSYISASPLSLKQQLSTRIGFLLQVIGINGQFPGPVLNVTTNWNVVVNVKNQLDEPLLLTWNGIQHRKNS WQDGVPGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLSFQRAAGGYGGIIVNNREVIALPFPLPDGDITLFIGDWYSRRHKDLRKDVENGKNLGPPDGIL MNGFGPYRYDQALVQEGTTYQIISVEPGKTYRFRVHNVGISTTLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSYSFLVSMDQNASTDYYIVASPR YVNSSTWNKASGVSILHYSNSQGPASGPLPDPPNAYDTFFSMNQARSIRSNVSAGAARPNPQGSFKYGQITVTDVYVIANRPAEMINGKWMTTLNGISYL QPSTPLTLAQQYNIPGIYKLDFPNQMMNRPSKLDTSLINGTFKGFTEIIFQNNDTTVQSYHMDGYAFFVVGMDFGVWTDNSRGTYNKWDGVARSTIQVFP GAWTAVLVYLDNAGMWNLRAENLDSWYLGQEVYVSVVNPEEDKGEFGLPDNAIYCGLLSHLQNSPHVVLFTNGQGPSSKIQVLRSIICFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	0	1
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10018924 [exp]	4.9	0.8365
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	7.1	0.8384
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Lus10029297 [exp]	7.9	0.8449
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	8.4	0.8512
AT2G45260			Plant protein of unknown funct...		Lus10024190 [exp]	8.8	0.8327
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	8.8	0.8368
AT3G24150			unknown protein		Lus10019404 [exp]	8.9	0.8246
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10026361 [exp]	9.3	0.8561
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	11.5	0.7779
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	13.2	0.8368

Compare expression of checked genes

Lus10038239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.