Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 437 / 3e-134 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 365 / 4e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G65850 364 / 2e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 367 / 4e-109 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 361 / 6e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 356 / 7e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 360 / 2e-105 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G46260 355 / 5e-105 disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 351 / 8e-105 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 352 / 9e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014829 [exp] 541 / 6e-177 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 545 / 1e-175 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 502 / 2e-159 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 473 / 5e-150 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 461 / 1e-144 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 387 / 5e-116 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 385 / 5e-116 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 376 / 2e-112 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 374 / 1e-111 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 534 / 4e-172 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 512 / 5e-164 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 511 / 6e-162 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 501 / 1e-156 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 491 / 4e-155 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 465 / 5e-148 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 468 / 4e-147 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070300 [exp] 461 / 4e-147 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 469 / 5e-146 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 441 / 8e-137 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10038249 pacid=23158222 polypeptide=Lus10038249 locus=Lus10038249.g ID=Lus10038249.BGIv1.0 annot-version=v1.0 ATGTCGACTCTCATCCTTCACCTTCTCCTCTTCCTACTCCAACTAATCCTCTTAACCACCCTTCTCCGTCCACCGCGGCGACTCCTCACCATCCTCCGAC GACATCTTCTTACACCTACCACCTCATCTCCGGCTGATAATCATCATTCACCTCCTCCTCCTCCTCCTCCACTTCTGGAACCAAAGTACGACGTGTTCAT AAGCTTCAGAGGGGACGACGTGCGGGACACATTCCTGAGCCATCTCTACACAAACCTGAACGATCACAAGAAGATCGACACGTACATAGACGACGTGGAT CTCGCTAGAGGGGAGCAAATATCTGCCTCCCTTCGAAACGCGATCGAGGTGTCGAGGGTGTACATCGTGATATTCTCTCCGAATTATGCCGAGTCGGAAT GGTGCTTGGAGGAGCTCGTGATGATGCTCGAGTGTAGCCGAAGGTATGGGGATATGAGGAAGGTGATACCGGTGTTCTATGGCGGGGTGGATCCCCGTGA TGTCCGACTACAAACTGGGAGCTATGCACTAGTTGGGAACAATAAAGTTGGGACATGGAGAGCTGCTTTGGCTGAAGCTTCTACCTTTTCTGGCTTCGAT TCACAGGTCACCAGGCCTGAATCTAAACTAATAGAGGAAATAGCAAAAGCCGTACTCGAAGGAATTCAAAACCAAAACACAACTCTAGCTCCACATTTCA AGAAGGGGTTAATTGGTGTCAGTGAGAGAATGGAAGAAATCGGACCACTACTATTTTGCTCCGAAACATCATCTGATCAGAATCAAACATTAGGGCTGTG GGGGATGGGCGGGATCGGCAAGACCACTCTAGCAAGATCCATCTTCCAACACTTCTCTACTCGATTCGAAGCTTCCGTATTCATCGAAAGTTTCGCCGAC CAACTCACCAGAACAGATGTGTTCAACTTACAGCATCAACTATTGTCAAGGTTGTTAGCTGATGGTCAGAAGAACACACACCAATTAACAACGCTCCCTA ACTCGACAATGTTGGTTCGCCTTCGACATAAACGGGTGCTTATTGTCATCGACGATGTGGGTAACGATGTGGGCAATATCGAATCATTAGATGATCTGCT GAAGGGGGAGATGTGTGGTTTGTTCGGACCGAGAAGCAAGATCATACTGACGAGTAGGAATAAGCAACTCCTTGAAATTTTGTGTCATCATGTATATGAA GTAAAGGGTCTGAATGAGTCTGAATCCCTTAAGCTTTTCAACTTCCATGCCTTCAAGGAGGAGGAGGAGGGAGAAGATTCCGAATCGTTATTAGCTTATA GTTTTGCAGAGAAGTCATGGAGAGCCGTGAGCTATGCTGGTGGGAATCCTTTAGCAATAAGGATTCTGGGATCGCATTTGTACGGTCGAGATGAGGAGTT CTGGGTACGAGAGTTGGATTGTTTGACAAGTAGTAATAACCCAACTGATCAAGTAGTTAAGAATGTGTTGAAGAGAAGCTATGATGGGTTGAGCAAAGTG GAGAAAGATGTGTTTCTTGACATTGCTTGCTTCTATCCCAAGTGGGATGGTAATATTTTGGGGAGATTTGAGGAGATGGTGTTGGAAGGTTGTTATGGGG GCAGTAAAAACCTTGTGATTAACCTAGTTGATAAATCTCTAATAACAATAATTGATGGTAATCATCCATGTTATTCCAGCATTATTAAGATGCATAAATT GCTGCAAGGTTTGGCCCATGGTATGGTGAATGAAGAATGCAGAGTTGGGAAACGTTCAAGGTTGTGGAAAGCTAAGGATATTTATTACCTTTTCAGGCAA AACAAGGGGACCGAAAGTGTGCAAGGAATTGTTTGGGACGTATCAGAGCTGAAGCATGAGGCTAAGGAGATACGAATCATGGGAGACGCATTCATGAACA TGGACAAATTACGAGTTCTTGTGATATATTACATGAGGGGAGATTGGATGCTGCAGCAGCCTAAGTTGATGATTCCAGAAACTGGGTTGATATCTCTTCC AGATTCTCTCAACTGTCTCTGTTGGGAGTCCTTCCCTTCAAAATCTTTGCCTACCCATTTCTCATCCCAAAATCTTGTCACACTGGATTTGACTAACAGC AATATCGAACAACTTTGGGATGCTCGCCAACAATTTGTGGACTTGGGTAATTTGAAATATCTAAGCTTAGGAGGATGCATATACTTGAGAAACTTACCAG ATCTCTCAAGTGCCACAAAGCTTCAACGTATGGATCTCGCATACTGCCAAAGCTTAATGGAGCTTCCTGTATCGATACTGCACTTGCCAAACCTAGAAGA AGTCTTACTATGGTATTGTATCAGTCTCGACCTTCACAACTTGGAACATTACGCAAACAATGCTACAGAGACAACAGCTCTATTATTACCAAGGTTGAAA AAACTATCCTTAACGGGAACTCGAATCCAAACAATCCCCGATTTCATATGTCGCCTACAAATTTCGGAGCTTTACTGCCTGGACTGTCCGACGATGATCA AGTTCCCGGTCATCCCATCCTTGAAAGTCTTAAGCTTGGGAAACACCATGATTAAGGAAGTTGATTTGCTCCACAGATTAAAGGAGTTGTGTTTGACTTC TAACAACCACCTCACCAACCTACCCACTGAAATCTACAAGTTGAGGTTTGTAGAAAGGATTGATTTGTCAAACTGCAGCCAGCTTAAGGAATTTCCTGAG ATTTTGGAGCCCATGGAAGCTTTGGAAGAACTTAATCTAAGTGGGTGCAATAATCTGAAGGTGCTTCCGTATAGTATCAGTAACTTGTTATATTTACAGA GGCTTTACTTGAGCAGTACAGCTATTGAAGAGGTTCCCACGAGTGTTATCGATCTATTTGAACTGGCGAGGCTGGACGTGTCTAACTGTAGCGAGCTGAC TCATTTGCCGGAGCTTCCTTCGTCGTTGAAATATTTGGATGCGTACAATTGCAAGTTACTTGAGAGGATAGAGATGGTTGGCAAACACAATCTTGTCGAT ACTCGATGGAGGCTTGGTGGATGTTCCAAGTTGGATGACAACACCTCTATTGCTGTTCTATCTCAGATGGACCGAGACTGA
AA sequence Show only first row Show all	>Lus10038249 pacid=23158222 polypeptide=Lus10038249 locus=Lus10038249.g ID=Lus10038249.BGIv1.0 annot-version=v1.0 MSTLILHLLLFLLQLILLTTLLRPPRRLLTILRRHLLTPTTSSPADNHHSPPPPPPPLLEPKYDVFISFRGDDVRDTFLSHLYTNLNDHKKIDTYIDDVD LARGEQISASLRNAIEVSRVYIVIFSPNYAESEWCLEELVMMLECSRRYGDMRKVIPVFYGGVDPRDVRLQTGSYALVGNNKVGTWRAALAEASTFSGFD SQVTRPESKLIEEIAKAVLEGIQNQNTTLAPHFKKGLIGVSERMEEIGPLLFCSETSSDQNQTLGLWGMGGIGKTTLARSIFQHFSTRFEASVFIESFAD QLTRTDVFNLQHQLLSRLLADGQKNTHQLTTLPNSTMLVRLRHKRVLIVIDDVGNDVGNIESLDDLLKGEMCGLFGPRSKIILTSRNKQLLEILCHHVYE VKGLNESESLKLFNFHAFKEEEEGEDSESLLAYSFAEKSWRAVSYAGGNPLAIRILGSHLYGRDEEFWVRELDCLTSSNNPTDQVVKNVLKRSYDGLSKV EKDVFLDIACFYPKWDGNILGRFEEMVLEGCYGGSKNLVINLVDKSLITIIDGNHPCYSSIIKMHKLLQGLAHGMVNEECRVGKRSRLWKAKDIYYLFRQ NKGTESVQGIVWDVSELKHEAKEIRIMGDAFMNMDKLRVLVIYYMRGDWMLQQPKLMIPETGLISLPDSLNCLCWESFPSKSLPTHFSSQNLVTLDLTNS NIEQLWDARQQFVDLGNLKYLSLGGCIYLRNLPDLSSATKLQRMDLAYCQSLMELPVSILHLPNLEEVLLWYCISLDLHNLEHYANNATETTALLLPRLK KLSLTGTRIQTIPDFICRLQISELYCLDCPTMIKFPVIPSLKVLSLGNTMIKEVDLLHRLKELCLTSNNHLTNLPTEIYKLRFVERIDLSNCSQLKEFPE ILEPMEALEELNLSGCNNLKVLPYSISNLLYLQRLYLSSTAIEEVPTSVIDLFELARLDVSNCSELTHLPELPSSLKYLDAYNCKLLERIEMVGKHNLVD TRWRLGGCSKLDDNTSIAVLSQMDRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10038249 [exp]	0	1
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	4.7	0.9194
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10032857 [exp]	6.8	0.8990
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	12.1	0.8932
AT5G55980			serine-rich protein-related (....		Lus10023227 [exp]	16.9	0.8213
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	17.3	0.8892
AT3G11810			unknown protein		Lus10030427 [exp]	22.2	0.8384
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	27.3	0.8871
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	28.7	0.8826
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	28.9	0.8888
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	32.2	0.8803

Compare expression of checked genes

Lus10038249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.