Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32800 115 / 1e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 110 / 2e-29 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 108 / 5e-29 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 108 / 1e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 107 / 2e-28 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT3G16280 107 / 2e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 102 / 4e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 102 / 2e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 100 / 5e-26 AP2_ERF ATERF38 ERF family protein 38 (.1) AT5G51990 95 / 5e-24 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025834 [exp] 230 / 1e-76 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 113 / 5e-31 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 113 / 9e-31 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 107 / 7e-28 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 100 / 1e-26 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 99 / 2e-26 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 101 / 3e-26 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 100 / 4e-26 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10027412 [exp] 97 / 8e-25 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G050700 [exp] 112 / 3e-30 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 111 / 5e-30 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 110 / 2e-29 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 109 / 1e-28 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 108 / 1e-28 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 107 / 4e-28 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 106 / 9e-28 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 103 / 8e-27 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 100 / 8e-26 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 97 / 3e-24 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10038270 pacid=23158347 polypeptide=Lus10038270 locus=Lus10038270.g ID=Lus10038270.BGIv1.0 annot-version=v1.0 ATGCCAGAGAAATACACCACCTCTACTACTACTACTACTACTACTACTACTTCCCCTTCTTCTTCATCCTCTTCCTCCTCTAACAGAAAACGACCCAGAA ATGACGGCGATGGTGCCCAACAACAAAATGTCCAACCCATTTTCAGAGGGGTGAGAAAGAGGAGCTGGGGGAAATTCGTGTCCGAGATTCGGCAGCCCAG GAAGAAATCCAGGATTTGGCTGGGAACTTTCCCCACGGCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCACTCAGCATCAAGGGCGACGCGGCCATT CTCAACTTCCCTCATCTAGCTGCGTCTCTCCCTCGCCCTGCTTCCTTGTCTCCTCCCGACATTCAGGAAGCCGCCGCCAAGGCTGCCGCTATGGTGGACT TGGACTCTTCCAGTAGTGCCAGTACAGCGTTAATTGCGGGGGAGGAGGAGGAGGAGGAATTGGGGGAAATTGTGGAGCTTCCGAACATTGAAGGGAGTTT ACTGTTCGAGCCGGAATTCGGGGTCAATGAATTGGTGGAGTTTGACTCGTCGGCTGAGTGCCAGCAGCAGCTGGGATGGGTGTACTACTGTTATCCGCCA TCGCTGCCAGCGGGGCTAGACTTGGATGGTTCCTTGCTGTGGGCGGATTAG
AA sequence Show only first row Show all	>Lus10038270 pacid=23158347 polypeptide=Lus10038270 locus=Lus10038270.g ID=Lus10038270.BGIv1.0 annot-version=v1.0 MPEKYTTSTTTTTTTTTSPSSSSSSSSNRKRPRNDGDGAQQQNVQPIFRGVRKRSWGKFVSEIRQPRKKSRIWLGTFPTAEMAARAHDVAALSIKGDAAI LNFPHLAASLPRPASLSPPDIQEAAAKAAAMVDLDSSSSASTALIAGEEEEEELGEIVELPNIEGSLLFEPEFGVNELVEFDSSAECQQQLGWVYYCYPP SLPAGLDLDGSLLWAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038270 [exp]	0	1
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	7.0	0.8698
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	12.7	0.8655
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	25.0	0.8624
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	25.9	0.8645
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	26.1	0.8493
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	32.5	0.8560
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	34.8	0.8538
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10020134 [exp]	46.3	0.8072
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	47.1	0.8440
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	48.1	0.8470

Compare expression of checked genes

Lus10038270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.