Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16350 237 / 7e-75 MYB Homeodomain-like superfamily protein (.1) AT5G47390 235 / 4e-74 MYB myb-like transcription factor family protein (.1) AT1G70000 153 / 8e-44 MYB myb-like transcription factor family protein (.1.2) AT5G56840 140 / 2e-39 MYB myb-like transcription factor family protein (.1) AT5G61620 139 / 5e-38 MYB myb-like transcription factor family protein (.1) AT2G38090 122 / 9e-32 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT1G49010 120 / 4e-31 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 119 / 5e-31 MYB Homeodomain-like transcriptional regulator (.1) AT5G04760 112 / 7e-29 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 114 / 9e-29 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025822 [exp] 560 / 0 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10037560 [exp] 375 / 1e-128 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10006826 [exp] 307 / 1e-102 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10040181 [exp] 223 / 1e-69 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 218 / 6e-68 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10013289 [exp] 155 / 3e-44 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 149 / 9e-42 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10036678 [exp] 140 / 2e-39 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10010733 [exp] 133 / 3e-36 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189800 [exp] 362 / 9e-124 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.003G049100 [exp] 356 / 2e-121 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.001G155300 [exp] 223 / 5e-70 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.003G079500 [exp] 210 / 8e-65 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.010G039233 [exp] 160 / 6e-46 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.008G191800 [exp] 154 / 1e-43 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.006G230500 [exp] 148 / 3e-42 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.001G080300 [exp] 133 / 1e-35 AT5G61620 176 / 1e-52 myb-like transcription factor family protein (.1) Potri.006G150300 [exp] 132 / 2e-35 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.012G060300 [exp] 124 / 1e-32 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038279 pacid=23158182 polypeptide=Lus10038279 locus=Lus10038279.g ID=Lus10038279.BGIv1.0 annot-version=v1.0 ATGATGACTCGCCGGTGCTCGCATTGCAGCAATAACGGCCACAACTCCAGGACGTGGCCCAAGCGCTCGACGTGTCCCACGCGCTCCGCCGCTCCCAGCG GCGGCGCGTCGTCTTCCTCTCTCTTGTCGTCGGCTGGCGTTAAGCTATTCGGCGTCAGGCTTACCGATGGCTCCTTCATCAAGAAGAGCGCCAGTATGGG GAACTTGTCTGCTGCGCACTACCATTCCTCGTCGTCGGCAGCTGCTTCCCCGAATCATGATTCTCCCGTCTCGGATCACGTACGCGATTCGGGTCGCCCA GCCGACGGGTATTTATCCGACGACCCGGCCCATGGTAGCTCTTTCAGTCGACGTGGAGATAGGAAGAAAGGTGTCCCCTGGACCGAAGAGGAGCATCGAT TATTCTTAATTGGTCTACAGAAATTTGGAAAAGGAGACTGGCGTGGAATAGCTCGGAACTATGTTGTGTCTAGGACTCCTACTCAGGTAGCTAGTCATGC TCAGAAGTATTTCATTCGGCAGAGCAATGCCACTCGAAGAAAGAGACGGTCAAGCCTGTTTGACATGGTCCCAGATGTGGCTTCTGATCCACAGCCAGTC CTGGAAGATAAAGATAAAGAGGAGTTGCCCTCTTTGCAGCAGTCAAGGGAAAATGATGATTCAGAAGATACACTTCCTTCGTTAAATCTCTCCCTTAAAC CCGAGTATGAGCCGATGGAAACCATGTCCGAAGAACCGGCTATGCAGGAGGAGGAGGAACCCAATGAAACTACAATGGGATCCATTGAGTCAAAACCAAG CGAGTTGTTAACATCAACAGCTCTGGGGTCGATCGAATTCACGCCATATGTTCATGGATTCTTCCCTGTTCATGTTCCGGTCCCTTATACGTACTGGCCT GTCGATACAGTCCCCATTGAGGAGAAGTCGATGGTTGCAGAAACATCTAAGGTGTTGAGGCCAGTTGCTGTGGTTCCCAAGGAACCGGTCAACGTAGAAG AACTGGTGGGCATCTCTCACTTGAGCCTCGCAGATAGTGCCGGTCTGAAATTGACAGCGGAGGCACCAAGGCAGTCTGCGTTTCATGCTAAGGCACAGGG AAGTGGATCTGATATAGTAGTAGGGAAGGGGAAGAAGGGTAGCAGTAACTCCATTGAAGCAGTATGA
AA sequence Show only first row Show all	>Lus10038279 pacid=23158182 polypeptide=Lus10038279 locus=Lus10038279.g ID=Lus10038279.BGIv1.0 annot-version=v1.0 MMTRRCSHCSNNGHNSRTWPKRSTCPTRSAAPSGGASSSSLLSSAGVKLFGVRLTDGSFIKKSASMGNLSAAHYHSSSSAAASPNHDSPVSDHVRDSGRP ADGYLSDDPAHGSSFSRRGDRKKGVPWTEEEHRLFLIGLQKFGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDVASDPQPV LEDKDKEELPSLQQSRENDDSEDTLPSLNLSLKPEYEPMETMSEEPAMQEEEEPNETTMGSIESKPSELLTSTALGSIEFTPYVHGFFPVHVPVPYTYWP VDTVPIEEKSMVAETSKVLRPVAVVPKEPVNVEELVGISHLSLADSAGLKLTAEAPRQSAFHAKAQGSGSDIVVGKGKKGSSNSIEAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10038279 [exp]	0	1
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	4.5	0.7519
AT3G16350	MYB		Homeodomain-like superfamily p...		Lus10025822 [exp]	4.8	0.7993
AT5G63050		EMB2759	embryo defective 2759 (.1.2)		Lus10001245 [exp]	5.7	0.7580
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	5.8	0.7757
AT5G14970			unknown protein		Lus10014506 [exp]	7.1	0.7284
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	12.8	0.7280
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10008239 [exp]	13.1	0.7528
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	22.8	0.7442
AT1G68190	CO		B-box zinc finger family prote...		Lus10034625 [exp]	23.7	0.7118
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	28.6	0.7358

Compare expression of checked genes

Lus10038279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.