Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20760 378 / 6e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 50 / 1e-06 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 45 / 4e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 45 / 5e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036204 [exp] 458 / 2e-163 AT4G20760 396 / 8e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016354 [exp] 55 / 3e-08 AT1G52340 389 / 4e-137 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019777 [exp] 54 / 4e-08 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 50 / 6e-07 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 47 / 8e-06 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 47 / 1e-05 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 47 / 1e-05 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 47 / 2e-05 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021319 [exp] 46 / 2e-05 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G157300 [exp] 400 / 9e-141 AT4G20760 436 / 9e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G024300 [exp] 57 / 4e-09 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 52 / 2e-07 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G236700 [exp] 51 / 6e-07 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 48 / 4e-06 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 47 / 8e-06 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 45 / 2e-05 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 45 / 4e-05 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G145800 [exp] 45 / 5e-05 AT3G26760 348 / 8e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 44 / 8e-05 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038343 pacid=23158427 polypeptide=Lus10038343 locus=Lus10038343.g ID=Lus10038343.BGIv1.0 annot-version=v1.0 ATGGTGAACGAACGAAAGGGGAAGAACGGCGACAATCCTGCACATTCAGGAGCTGCGAACTCTATCAATGGCGATGAAGCATTTTCTACTAAACAACATC CAACACATCGCAAAGTCGCCGGTGGCTTTCAGATCGACGAGATGCGCTTCTTTTGCATCCGCTTCGACTGTAGGAGGTGGCGTATCGATGGTACAAGGCG CCTCCAGAGGAATTGGTCTCGAATTCGTGAGTTCAATTCTCTTGATTGTAAAAACCGCGGCACGGTTGAATTTCTAGTTCTAGGGATTAAGAAGGCAATG CGTTTTGGTTTCTCTTGCAAGGTTAAACAACTCCTGGAAAGGAACGAGAATGGGAGTGTTGTAGCTACTTGTCGAAATCCCGATGGGGCAACGGGATTGT TGGAGTTGAAGAACAAGTATGCCGAGCGACTCAACATTTTTCCATTGGACCTCACCGTTGAGAGTACCATCCAGGCATCCGCAGAGTTCATAATGAAACA GTACGGTTCTCTTAACCTCCTTATCAATGCATCAGGCATCTTGTCCATACCCAGTGTCATTCAACCAGAGACGACATTGAGCAAAGTGGAGAAATCTGCC TTAATGTTAGCTTATGAAGTTAATGCTGTTGGTCCTATTCTAGTGATCAAGCATATGTGGCCTCTGCTGAAAGCTGGAGGAGGCCAACATACTGGAAAAG ATTTTGCTGTTATAGCAAGTCTGAGTGCCAGGGTGGGATCCATTGGTGATAATAAACTTGAGGGTTGGCACTCCTACCGCAGTTCAAAGTCTGCCTTAAA CCAGTTATCCAAGACGGTGTCAGTGGAATTGGGAAGGAAGAAGGATCCGATAATATGTATAGTTCTTCATCCGGGGACAGTGGATACAGACCTGTCAAGG CCATTCCAGAAGAATGTTCCCAAAGATAAACTCTTCACTAAGGAGTTCTCTGCACAGAAGCTATTGGGCATCATCGATAACACAAAGATTACCGACAATG GCAAGTTCTTCGCATGGGATGGCCAAGAAATTCCTTGGTGA
AA sequence Show only first row Show all	>Lus10038343 pacid=23158427 polypeptide=Lus10038343 locus=Lus10038343.g ID=Lus10038343.BGIv1.0 annot-version=v1.0 MVNERKGKNGDNPAHSGAANSINGDEAFSTKQHPTHRKVAGGFQIDEMRFFCIRFDCRRWRIDGTRRLQRNWSRIREFNSLDCKNRGTVEFLVLGIKKAM RFGFSCKVKQLLERNENGSVVATCRNPDGATGLLELKNKYAERLNIFPLDLTVESTIQASAEFIMKQYGSLNLLINASGILSIPSVIQPETTLSKVEKSA LMLAYEVNAVGPILVIKHMWPLLKAGGGQHTGKDFAVIASLSARVGSIGDNKLEGWHSYRSSKSALNQLSKTVSVELGRKKDPIICIVLHPGTVDTDLSR PFQKNVPKDKLFTKEFSAQKLLGIIDNTKITDNGKFFAWDGQEIPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	0	1
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	4.1	0.9559
AT5G48830			unknown protein		Lus10038165 [exp]	4.9	0.9479
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	5.1	0.9548
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	5.9	0.9463
AT3G06670			binding (.1.2)		Lus10021547 [exp]	6.0	0.9484
AT2G21385			unknown protein		Lus10017494 [exp]	8.7	0.9481
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	11.3	0.9418
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	12.0	0.9434
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Lus10033200 [exp]	12.5	0.9486
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	16.0	0.9421

Compare expression of checked genes

Lus10038343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.