Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 1026 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 1010 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 887 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT3G02050 550 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT1G60160 539 / 0 Potassium transporter family protein (.1) AT2G40540 534 / 7e-180 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT2G30070 521 / 9e-176 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G70300 519 / 4e-174 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT5G14880 517 / 2e-173 Potassium transporter family protein (.1) AT4G33530 514 / 2e-171 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036221 [exp] 1248 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10018324 [exp] 1098 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 529 / 8e-178 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012993 [exp] 529 / 9e-177 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10030632 [exp] 519 / 6e-174 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10036160 [exp] 514 / 2e-172 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10003402 [exp] 516 / 1e-171 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10030539 [exp] 508 / 2e-169 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10027004 [exp] 501 / 4e-167 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123800 [exp] 1122 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 1098 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123700 [exp] 954 / 0 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109800 [exp] 896 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 598 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 584 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.010G094400 [exp] 555 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.010G094300 [exp] 530 / 2e-178 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 530 / 3e-178 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.009G073500 [exp] 524 / 2e-176 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10038361 pacid=23158418 polypeptide=Lus10038361 locus=Lus10038361.g ID=Lus10038361.BGIv1.0 annot-version=v1.0 ATGAGTATGGATATGGAAGGTGGTGTTATTGACGGAGGAGACAGTGAGTCCAACAAAGGTAGTATGTGGGATTTAGATCAGAAGCTTGATCAATCCATGG ACGAGGAAGCTGGAAAGCTCAAAAATATGTACAGAGAAAAGAAATTCTCATCACTTCTGCTTCTGAGGCTAGCATTTCAGAGTTTGGGAGTTGTTTATGG GGACTTGGGTACTTCTCCATTGTATGTGTTCTACAACACTTTCCCCAATGGAATCTCCGACCCGGAAGATGTGATTGGAGCTCTATCATTGATCATATAC TCTCTTACTCTTGTACCTCTCATCAAGTATGTCTTCATTGTGTGCAGAGCTAATGACAATGGTCAAGGCGGAACATTGGCTCTGTACTCATTGCTTTGCC GGCATGCGAAAGTGAAAACTATTCCGAATCAACACCGGACTGACGAGGATCTAACAACGTACAGCCGCTCTACCTTCCATGAACAGTCTTTTGCAGCAAA AACGAAGCGATGGTTAGAGGGACATGCATGTCTTCTATCAGCTGCTGGTGGGATCAAGGTGAACAGTCCGAAAGTTAGCAATGATGTAGTGATACTAGTT GCAGTTGTAATATTAGTAGGTCTCTTCAGCATGCAACATTACGGGACCGATAAAGTTGGTTTGTTCTTTGCTCCAATCGTCCTGCTTTGGTTTCTGTTAA TTGGAGGCATTGGCATATACAATATCTGCAAGTATGACAAAAGTGTTCTTAAAGCCTTTTATCCTCTATATGTTTACCGGTATCTTAGAAGGGGAGGCAG AGAAGGCTTTTTATCTCTTGGTGGTATCATGCTCAGTATTACGGGTACCGAGGCACTTTTCGCTGATCTAGCTCATTTCCCAGTAGCAGCCATTCAGCTT GCTTTTACTGTAGTTGTTTTCCCTTGCCTTCTTCTTGCATATTCTGGGCAAGCTGCTTATCTAATGAAGAACCAGGAACACGTGGTTGATGCGTTTTATC ATTCTATTCCAGATAGGATATATTGGCCAGTGTTTCTCGTTGCTACTGCAGCTGCTATCGTCGCAAGTCAGGCCACGATCTCTGCAACTTTTTCAATAAT CAAGCAGGCACATGCTCATGGCTGTTTCCCTAGAATCAAAGTAGTGCATACATCAAAGAAGTTCCTCGGGCAGATATATGTCCCAGATATCAATTGGATC CTAATGGTTCTCTGTATCTGTGTGACTGCTGGATTCAGAAAGCAAAGCCAAATTGGGAACGCTTATGGAACAGCAGTGGTGATAGTAATGCTGGTCACCA CCCTACTCATGGTCCTCATAATGATCCTCGTATGGCGCTCTCACTGGATCCTCGTCGTGATCTTTACCGCCTTATCCCTCGTCGTGGAATGCACCTACTT CTCGGCTGTGCTCTTCAAGGTCAACCAAGGCGGCTGGGTCCCTCTCGTCATTGCAGGTGCTTTCCTCATCATCATGTATGTTTGGCATTATGGCACAGTC AAGCGCTACGAGTTTGAAATGCACAGTAAGGTCTCTATGGCGTGGATTGTGGGACTCGGTCCCAGTCTAGGACTCGTGAGGGTCCCCGGGATCGGCCTGG TATACACCGAGCTTGCCAGTGGTGTCCCGCACATCTTCTCCCATTTCATCACCAATCTACCAGCCATCCACTCTGTTGTAGTTTTCGTGTGCGTCAAGTA TCTTCCCGTCTACACAGTCCCGGAAGAGGAACGGTTTCTGGTCAAGAGAATCGGCCCCAAGAACTTCAGGATGTTCAGGTGTGTGGCCAGGTACGGCTAC AAAGACCCCCACAAGAAAGATGAAGACTTTGAGAAGAAGCTATTCGACAGTCTCTACCTCTTTGTTCGGCTCGAGTCCATGATGGAAGGATGCTCAGATT CCGACGAGTACAGCTTATACGGTCAACAAAATGAACGTTCAAGGGACGTGAGCTCACTCGAGGATCCGACAATGTCGTCCAATGATTCGATCGTGCAGGT GGTGAAGCCATTATCGGTGTACCGGACAAATGGGTCGTCTGGGCAGACGAGTAGCCACACGGAGGTCGATGAGGTGGAGTTTCTGCACGGATGTCGAGAT GCCGGAGTTGTACATATCATGGGGAACACCGTGGTGAGAGCTAGGAGGGAGTCCAGGTTTTACAAGAAGATAGCGGTTGATTACATATATGCATTCCTTA GGAAGATATGTCGAGAGCACAGTGTGATATTCAATATCCCTCATGAGAGCCTCTTGAACGTTGGCCAGATCTTCTATGTCTAA
AA sequence Show only first row Show all	>Lus10038361 pacid=23158418 polypeptide=Lus10038361 locus=Lus10038361.g ID=Lus10038361.BGIv1.0 annot-version=v1.0 MSMDMEGGVIDGGDSESNKGSMWDLDQKLDQSMDEEAGKLKNMYREKKFSSLLLLRLAFQSLGVVYGDLGTSPLYVFYNTFPNGISDPEDVIGALSLIIY SLTLVPLIKYVFIVCRANDNGQGGTLALYSLLCRHAKVKTIPNQHRTDEDLTTYSRSTFHEQSFAAKTKRWLEGHACLLSAAGGIKVNSPKVSNDVVILV AVVILVGLFSMQHYGTDKVGLFFAPIVLLWFLLIGGIGIYNICKYDKSVLKAFYPLYVYRYLRRGGREGFLSLGGIMLSITGTEALFADLAHFPVAAIQL AFTVVVFPCLLLAYSGQAAYLMKNQEHVVDAFYHSIPDRIYWPVFLVATAAAIVASQATISATFSIIKQAHAHGCFPRIKVVHTSKKFLGQIYVPDINWI LMVLCICVTAGFRKQSQIGNAYGTAVVIVMLVTTLLMVLIMILVWRSHWILVVIFTALSLVVECTYFSAVLFKVNQGGWVPLVIAGAFLIIMYVWHYGTV KRYEFEMHSKVSMAWIVGLGPSLGLVRVPGIGLVYTELASGVPHIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERFLVKRIGPKNFRMFRCVARYGY KDPHKKDEDFEKKLFDSLYLFVRLESMMEGCSDSDEYSLYGQQNERSRDVSSLEDPTMSSNDSIVQVVKPLSVYRTNGSSGQTSSHTEVDEVEFLHGCRD AGVVHIMGNTVVRARRESRFYKKIAVDYIYAFLRKICREHSVIFNIPHESLLNVGQIFYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10038361 [exp]	0	1
					Lus10036131 [exp]	5.7	0.9361
AT3G19230			Leucine-rich repeat (LRR) fami...		Lus10010528 [exp]	6.3	0.9305
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	7.7	0.9365
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	7.9	0.9368
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	9.0	0.9260
AT4G35240			Protein of unknown function (D...		Lus10023949 [exp]	10.4	0.8845
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	12.1	0.9425
AT2G37470			Histone superfamily protein (....		Lus10023753 [exp]	14.0	0.9096
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025596 [exp]	23.4	0.9071
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10013107 [exp]	25.5	0.9253

Compare expression of checked genes

Lus10038361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.