Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 315 / 2e-98 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 311 / 9e-97 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 266 / 1e-79 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT4G13420 196 / 3e-54 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT5G14880 194 / 2e-53 Potassium transporter family protein (.1) AT2G30070 191 / 6e-53 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT1G60160 189 / 2e-51 Potassium transporter family protein (.1) AT2G40540 185 / 2e-50 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT1G70300 185 / 2e-50 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT3G02050 173 / 4e-46 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036222 [exp] 622 / 0 AT2G35060 812 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 333 / 5e-105 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10018324 [exp] 326 / 4e-102 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 293 / 4e-90 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10029050 [exp] 222 / 6e-64 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10012888 [exp] 220 / 3e-63 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10029172 [exp] 217 / 1e-61 AT2G30070 590 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10027004 [exp] 210 / 3e-59 AT4G13420 828 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10014531 [exp] 207 / 1e-58 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123700 [exp] 367 / 6e-118 AT2G35060 1047 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109800 [exp] 356 / 5e-114 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G123800 [exp] 353 / 1e-112 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 343 / 8e-109 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.001G045200 [exp] 206 / 1e-57 AT4G13420 978 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069650 [exp] 205 / 3e-57 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.001G069799 [exp] 202 / 6e-57 AT4G13420 845 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Potri.009G073500 [exp] 202 / 1e-56 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.019G056500 [exp] 201 / 5e-56 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.014G132500 [exp] 200 / 1e-55 AT4G13420 852 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10038362 pacid=23158211 polypeptide=Lus10038362 locus=Lus10038362.g ID=Lus10038362.BGIv1.0 annot-version=v1.0 ATGGCTGCAAAGAGCGACGAGGTAGCCAACAAAAATGGCAGATTGTGGGCACTTGATCAACAGTTCGATCAGCCGATGGATGTGGAAGCTGATTGCATCA AGCCCCAGAACGACGAATCGAAGCCTTCCACATTCGAGCTCTTGAGGCTGGCTTTCCAAAGCCTTGGAATTGTGTATGGAGATTTAGGCACCTCTCCATT GTATGTGTTCTACGACACATTTCCGCACGGGATCGAGGATCCGGAAGATGTGGTTGGTGCTCTATCGTTCATCATTTACTCTCTTGCTCTCATTCCTCTG GTGAAGCATGCCAAAATAAGGACGATCCCGAACCAAGATCACACCAACGAAAGGCTGAGGACGTACAGCACCTCAACTTTCCATGAAAAGTCGTTTGCTG CAAAGACAAAGAGGTGGCTCGAGAGATATTCGTATACAAAGAACGGACTTCTTATTCTTGTTATTATCGGCTCTTCAATGTTGATCGGAGACGGGGTTTT CATGCCTTGCATTTCAGTTGTGTCAGCTATTAATGGAATCAAGCGAAGTCATCATCATCGGATGAGTCAGGGAATTGGCATATTCAACATCGTGAAGTAT ACCAAAGCCTTGAAAGCATTTTCGCCTGTATATATGTATCGCACTTTTAATGGGAACCATAAGGATGCTTGGCTATCTCTTGGAGGTGTCATGCTTAGTA TAGCTGGATCGGAGGCTCTCTTTGCTGATATATCCAACTTTTCAGTCTCAGCCATCCAAATTGCTTTCCTTGTTGTGGTATTTCCATGTCTTATACTGTC ATATTCGGGCCAGGCAGCATATCTTATGAAACACTCGGATCGCGTAGGTGATGCATTTTATAGTTCAATTCCAGGTACTGCAGTAGTGGTAGTCACTCTA GTGACGACGCTGTTTGTAACGCTGATCATGATACTAGTATGGAGATGCCATCGGATATTTGCTCTCCTCTTTGCAGCTTTCTTCTTGCTGATAGAAGGAA CTTACTTCTGTTCCATAATACTCAAAGTCCACCAAGGTGGTTGGGTCCCTCTAGTCATAGCAGCATGCTGTTTCGTAGCCATGTACGGATGGCACTACGG GAGGCAGAAGTGCTACGAGTTCGAGATACGAGTTCGAGATCCACGGAGAATCGGCGCCAAGGACTTCCACATGTTCCGTTGCGTGGCGAGGTACGGGTAC AAGGACCTCCACAAGAAAGACGATTACTTTGAGAGCAAGCTATTCGAAAGCATCTTCAGATTCGTTAGGCTTGATTCGATGATGGACATGGATTACTCGG ATGATGACTACAGCTTCGATGAGAACGATTTCAACGGTACTGATGGGGATACAACGGTAGACATGCCTCGAGCGCAGGAAGGGGAGATATTGGTTAGCAA CAACAACGAGATTCGGGGAAGGAATTTCGAGCCGGATGAGTTGGAGTTGTTGAGGAAGTGCAGGGGAGCAAGGGTGGTGAATATACTAGGGAATACATTG GTGGCAGCAAGGGAGGATTCAGGGTGGAGAAAGAAAATAGCCATTGATTATGTGTATGCTTTGCTTAGGAAGCTCTCAAGGGAGAACAGTGTGTTGTTGA ATATCCCTAGAGAGAGTTCTTTGAATGTTGGACAGGTTATCACTGTCTAG
AA sequence Show only first row Show all	>Lus10038362 pacid=23158211 polypeptide=Lus10038362 locus=Lus10038362.g ID=Lus10038362.BGIv1.0 annot-version=v1.0 MAAKSDEVANKNGRLWALDQQFDQPMDVEADCIKPQNDESKPSTFELLRLAFQSLGIVYGDLGTSPLYVFYDTFPHGIEDPEDVVGALSFIIYSLALIPL VKHAKIRTIPNQDHTNERLRTYSTSTFHEKSFAAKTKRWLERYSYTKNGLLILVIIGSSMLIGDGVFMPCISVVSAINGIKRSHHHRMSQGIGIFNIVKY TKALKAFSPVYMYRTFNGNHKDAWLSLGGVMLSIAGSEALFADISNFSVSAIQIAFLVVVFPCLILSYSGQAAYLMKHSDRVGDAFYSSIPGTAVVVVTL VTTLFVTLIMILVWRCHRIFALLFAAFFLLIEGTYFCSIILKVHQGGWVPLVIAACCFVAMYGWHYGRQKCYEFEIRVRDPRRIGAKDFHMFRCVARYGY KDLHKKDDYFESKLFESIFRFVRLDSMMDMDYSDDDYSFDENDFNGTDGDTTVDMPRAQEGEILVSNNNEIRGRNFEPDELELLRKCRGARVVNILGNTL VAAREDSGWRKKIAIDYVYALLRKLSRENSVLLNIPRESSLNVGQVITV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	0	1
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10027126 [exp]	1.4	0.9259
AT5G55060			unknown protein		Lus10032631 [exp]	2.6	0.9082
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	3.7	0.9282
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	5.5	0.9238
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	5.7	0.9176
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	8.1	0.9152
AT1G11340			S-locus lectin protein kinase ...		Lus10013910 [exp]	11.5	0.9150
AT1G22100			Inositol-pentakisphosphate 2-k...		Lus10010640 [exp]	12.3	0.8963
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	18.7	0.8780
AT1G59077			unknown protein		Lus10022089 [exp]	20.6	0.8634

Compare expression of checked genes

Lus10038362 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.