Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12720 214 / 4e-68 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT1G57560 191 / 7e-59 MYB ATMYB50 myb domain protein 50 (.1) AT5G26660 191 / 1e-58 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G09540 189 / 1e-57 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT4G01680 182 / 1e-56 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT3G13890 179 / 8e-54 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2) AT5G65230 175 / 8e-53 MYB ATMYB53 myb domain protein 53 (.1) AT4G22680 173 / 1e-52 MYB ATMYB85 myb domain protein 85 (.1) AT5G10280 174 / 2e-52 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT2G16720 172 / 3e-52 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001226 [exp] 476 / 2e-171 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10040139 [exp] 182 / 1e-56 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10001093 [exp] 182 / 2e-55 AT5G16770 232 / 4e-74 myb domain protein 9 (.1.2) Lus10038022 [exp] 183 / 1e-54 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10015608 [exp] 181 / 2e-54 AT3G13890 249 / 8e-80 MALE STERILE 35, myb domain protein 26 (.1.2) Lus10041142 [exp] 173 / 5e-52 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 172 / 7e-52 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10027197 [exp] 169 / 2e-51 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10028435 [exp] 167 / 6e-51 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G155700 [exp] 219 / 9e-70 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.001G075400 [exp] 213 / 4e-67 AT3G12720 246 / 6e-80 myb domain protein 67 (.1) Potri.008G081600 [exp] 206 / 2e-64 AT3G12720 262 / 2e-86 myb domain protein 67 (.1) Potri.010G174500 [exp] 200 / 3e-62 AT3G12720 244 / 3e-79 myb domain protein 67 (.1) Potri.012G084100 [exp] 195 / 5e-60 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.015G082700 [exp] 193 / 3e-59 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.013G001000 [exp] 192 / 5e-58 AT1G09540 382 / 1e-130 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.005G001600 [exp] 189 / 6e-57 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.010G004300 [exp] 186 / 2e-56 AT1G57560 247 / 4e-80 myb domain protein 50 (.1) Potri.003G094200 [exp] 184 / 3e-56 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038395 pacid=23158363 polypeptide=Lus10038395 locus=Lus10038395.g ID=Lus10038395.BGIv1.0 annot-version=v1.0 ATGCAACGTCCCAAGACGACTACGACAACAGGACATAAGTGCTGTACGAAGCAGAAGGTGAGGAAAGGGCTTTGGTCTCCTGATGAAGATGAGAGGCTCT TCCACTTCATCACCTCCAATGGCCACCCTTCTTGGAGCTCTGTCCCCAAGCTCGCTGGATTACAAAGATGTGGAAAGAGTTGTAGGTTGAGGTGGCTAAA CTATTTACGGCCAGATCTTAAAAGGGGAGGCTTCACTCATAAAGAAGAGAGAATTATCGTCGATGCTCATCGGATGTTAGGGAACAAATGGGCTCAAATA GCCAAGCATTTGCCTGGTCGAACAGATAACGAAATTAAGAACTTTTGGAACTCGTACATAAAGAAGAAGCTCATTTCCCAAGGTATAGATCCGAACACCC ACAACCAGTTACAGTCGGCCACAACATCTTCTTATTCTTCTTCAACGTCGTCGTTAATCTTCAATGTGGCTCCTAATAAAAAACAAACGACCTCGTCGAA TGTTGATGTCCTCCCATCAATATTCTTCCCGTTCAATGTGGACTATGACGATACCAACATCCATCCATTAATACCGCCAACGACCAACCGAGTTGGTGAT CACGAGATAACCGACAATGGACTTTGGGACTATGGACCGGGATTGGAATCCAACGAGAACGTCGTTTATCATCAAGTTCAACCGACGTTCTCGTTGGATT CCAAGTCCGATGTTAAATTTCAAGGCGATGGTAGTGTGGAGTGGGAGATGAACGACGGTTCGCTCGAGGGATCGAACTTGTTTGATTTTGATTATGGGGA ATCTGCGACGAATCATCCAGCAGGGTTGGAAGAGATTATTGCTACTAACTACAGTGGTAATGATGAGCTGTGGGATGTATTATAG
AA sequence Show only first row Show all	>Lus10038395 pacid=23158363 polypeptide=Lus10038395 locus=Lus10038395.g ID=Lus10038395.BGIv1.0 annot-version=v1.0 MQRPKTTTTTGHKCCTKQKVRKGLWSPDEDERLFHFITSNGHPSWSSVPKLAGLQRCGKSCRLRWLNYLRPDLKRGGFTHKEERIIVDAHRMLGNKWAQI AKHLPGRTDNEIKNFWNSYIKKKLISQGIDPNTHNQLQSATTSSYSSSTSSLIFNVAPNKKQTTSSNVDVLPSIFFPFNVDYDDTNIHPLIPPTTNRVGD HEITDNGLWDYGPGLESNENVVYHQVQPTFSLDSKSDVKFQGDGSVEWEMNDGSLEGSNLFDFDYGESATNHPAGLEEIIATNYSGNDELWDVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Lus10038395 [exp]	0	1
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	3.9	0.8363
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10006669 [exp]	6.0	0.8136
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10011280 [exp]	6.2	0.6890
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026690 [exp]	9.3	0.6176
					Lus10012943 [exp]	9.7	0.7604
					Lus10017698 [exp]	10.6	0.7576
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013916 [exp]	11.0	0.7634
					Lus10028788 [exp]	17.1	0.7770
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	17.4	0.7150
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10027709 [exp]	19.5	0.6236

Compare expression of checked genes

Lus10038395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.