Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18220 278 / 5e-91 Drug/metabolite transporter superfamily protein (.1) AT4G18210 278 / 2e-90 ATPUP10 purine permease 10 (.1) AT4G18197 239 / 1e-75 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT4G18205 234 / 1e-73 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18195 229 / 2e-71 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT1G44750 220 / 5e-68 ATPUP11 purine permease 11 (.1.2.3) AT5G41160 213 / 1e-65 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT4G08700 212 / 3e-65 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT4G18190 209 / 5e-64 ATPUP6 purine permease 6 (.1) AT2G33750 166 / 9e-48 ATPUP2 purine permease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026130 [exp] 369 / 6e-126 AT4G18210 382 / 2e-131 purine permease 10 (.1) Lus10008689 [exp] 368 / 8e-126 AT4G18210 382 / 3e-131 purine permease 10 (.1) Lus10023318 [exp] 289 / 7e-97 AT4G18210 159 / 9e-47 purine permease 10 (.1) Lus10019503 [exp] 243 / 3e-77 AT1G44750 452 / 1e-159 purine permease 11 (.1.2.3) Lus10023317 [exp] 232 / 5e-76 AT4G18210 150 / 3e-45 purine permease 10 (.1) Lus10043350 [exp] 239 / 3e-75 AT1G44750 456 / 8e-161 purine permease 11 (.1.2.3) Lus10030927 [exp] 219 / 9e-68 AT4G18210 336 / 1e-113 purine permease 10 (.1) Lus10040118 [exp] 211 / 1e-64 AT4G18210 336 / 2e-113 purine permease 10 (.1) Lus10028132 [exp] 211 / 5e-64 AT4G18220 361 / 4e-123 Drug/metabolite transporter superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G352100 [exp] 319 / 2e-106 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 293 / 1e-96 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.001G147600 [exp] 269 / 4e-87 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.014G043900 [exp] 251 / 2e-80 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.005G160300 [exp] 147 / 1e-40 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.006G184900 [exp] 124 / 5e-32 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.002G099600 [exp] 124 / 5e-32 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.003G156900 [exp] 72 / 1e-13 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 64 / 4e-11 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10038492 pacid=23158329 polypeptide=Lus10038492 locus=Lus10038492.g ID=Lus10038492.BGIv1.0 annot-version=v1.0 ATGCCCACGCAGCAGCCTTCCGAAATCCAACTCCAGGTTCTTGGCGGCGGCGATGACATCAAAGAGCTGCCGGCGGCGGCGGGAAACCAGACTCGCGCAG CTAAAAGAAACTACTGGTGGTGGACAAAAGTCGCAATCTACACAGTCCTTGTCCTCTTAGGACAATCAGTCGGCCTTCTCTTGGGAAGGCTCTACTTCGT CAAAGGTGGCACAAGCAAATGGATTTCCTCTGTCGTCCAAGTCGCCGGCTTTCCGGTCCTCATCCCTTACTACCTCCTCGTACTACCCAAACTGCAGCGA GATCAGGGTTCATCCAAATCGCCGGCGGTGGGGACGGCGGCGCCATCCCCGTTCACTCTGGTATCGATCTACTGCGGACTGGGACTGATCCTGGGATTCA GCACCTTCCTCTACTCAGTGGGCCTCCAGTACCTCCCAGTCTCCACCTACACACTCCTATGTTCATCCCAACTAGCATTCAACTCCTTCTTCGCCTACTT CCTCAACTCCCAGAAATTCACCCCTTACGTTGTCAACTCCTTAATCCTCCTCACCATCTCCTCCCTCCTGCTCGTCTTCAACACCTCCGACGACAACTCC GGGGGCCCCACAATCTCCAAAATCAAATACACCACAGGCTTCATCTGCACTCTGGCCGCCTCTGCCATCTACGGTCTTATCCTATCCCTAACGGAGTTCA CCTTCACCAGGGTTATCAAACGGCGCAGTTTCCAGAACGTGATGGACATGAACATCTGCCTCAACTTCGCCGCCACGTCGGTCACCCTCGTGGGCCTTTT TGCGAGCGGGGAGTGGAAAAGATTGGGTGCTGAGATGACTGATTACAGCCTTGGAATGGCGTCGTATGTGATGACTTTGGTCGGGATCGCTGTATTCTGC CAGCTGTTTTATATCGGGGTTGTCGGGGTGGGCGTTGTTGGACTGATTTTTGAGGTGTCGTCGCTGTTTTCGAATTCGATCAGTGTGGTTGGTGCCCCGA TTGTTCCGATCATGGCGGTGGTGATTTTCCATGATAAGATGAGTGGTGTTAAGGGGGTTTCGATGGCGTTGGCGATTTGGGGGTTTGTTTCTTATATTTA TCCTTATTATGTTGATGAGCGTGAGTCTAAGAAGGCGGCGGAGGACGCCGGCAACAGTAGTCCGGCGTTGGTTGATGATCAGAACTGA
AA sequence Show only first row Show all	>Lus10038492 pacid=23158329 polypeptide=Lus10038492 locus=Lus10038492.g ID=Lus10038492.BGIv1.0 annot-version=v1.0 MPTQQPSEIQLQVLGGGDDIKELPAAAGNQTRAAKRNYWWWTKVAIYTVLVLLGQSVGLLLGRLYFVKGGTSKWISSVVQVAGFPVLIPYYLLVLPKLQR DQGSSKSPAVGTAAPSPFTLVSIYCGLGLILGFSTFLYSVGLQYLPVSTYTLLCSSQLAFNSFFAYFLNSQKFTPYVVNSLILLTISSLLLVFNTSDDNS GGPTISKIKYTTGFICTLAASAIYGLILSLTEFTFTRVIKRRSFQNVMDMNICLNFAATSVTLVGLFASGEWKRLGAEMTDYSLGMASYVMTLVGIAVFC QLFYIGVVGVGVVGLIFEVSSLFSNSISVVGAPIVPIMAVVIFHDKMSGVKGVSMALAIWGFVSYIYPYYVDERESKKAAEDAGNSSPALVDDQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10038492 [exp]	0	1
AT5G13550		SULTR4;1	sulfate transporter 4.1 (.1)		Lus10040319 [exp]	2.0	0.8595
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10022294 [exp]	2.4	0.8436
AT3G23570			alpha/beta-Hydrolases superfam...		Lus10004436 [exp]	4.1	0.8667
AT4G02920			unknown protein		Lus10027996 [exp]	5.7	0.8343
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10024830 [exp]	6.0	0.7909
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	6.3	0.7990
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	9.2	0.7996
AT1G52310			protein kinase family protein ...		Lus10023500 [exp]	10.4	0.7162
AT4G04610		1-Apr, PRH19, A...	PAPS REDUCTASE HOMOLOG 19, APS...		Lus10020040 [exp]	18.0	0.7610
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033338 [exp]	20.3	0.8052

Compare expression of checked genes

Lus10038492 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.