Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34560 571 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G80350 295 / 5e-95 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G27600 262 / 2e-83 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT2G45500 249 / 5e-78 AAA-type ATPase family protein (.1.2) AT3G27120 245 / 2e-76 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G02890 219 / 1e-62 AAA-type ATPase family protein (.1.2) AT3G19740 216 / 5e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G02480 216 / 7e-62 AAA-type ATPase family protein (.1) AT1G50140 213 / 4e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G28000 211 / 9e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023310 [exp] 733 / 0 AT2G34560 551 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10011477 [exp] 300 / 5e-97 AT1G80350 904 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023115 [exp] 300 / 6e-97 AT1G80350 906 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004891 [exp] 262 / 2e-83 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10019537 [exp] 260 / 1e-82 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10038001 [exp] 260 / 3e-82 AT2G45500 679 / 0.0 AAA-type ATPase family protein (.1.2) Lus10009233 [exp] 259 / 8e-82 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10020589 [exp] 258 / 2e-81 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10043381 [exp] 245 / 2e-76 AT2G27600 778 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G065100 [exp] 640 / 0 AT2G34560 600 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G085200 [exp] 637 / 0 AT2G34560 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G176900 [exp] 296 / 2e-95 AT1G80350 809 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G057800 [exp] 289 / 6e-93 AT1G80350 814 / 0.0 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G184500 [exp] 263 / 8e-84 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 262 / 1e-83 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.010G237100 [exp] 262 / 2e-83 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 258 / 4e-82 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022300 [exp] 256 / 4e-81 AT2G27600 703 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.014G071900 [exp] 257 / 1e-80 AT2G45500 696 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10038499 pacid=23158481 polypeptide=Lus10038499 locus=Lus10038499.g ID=Lus10038499.BGIv1.0 annot-version=v1.0 ATGGCCGATGATGAACCTTCCGTTACTCGCTGGACTTTTCCGGATTTCAAAACCCACTACGATGATAAGTTCGGAAGAAAGAAAGCGCAGGAGTCCCGAA ACGGTCAAGTGAACGGTAATGGATCGGTCTCCAACGGGAGTTCTTCAGGCATTGTTGTTGCTAATGGCAACGGCCAGGTGAAGAATCCATCTGACATGGC CATTTATGAGCAGTTCAGAAACCAGCAGAATGGGAGCTCAGGTCGCCAGAGTGAAACTTCATCCAATGGAGTTGCGGAAGTCCCGCAGAAGTCCTTGCTC CCTGCTTTTGATTCTGCTGAAACACGCACTTTAGCTGAGGGTTTATGCAGGGATATTATACGTGGGAGCCCAGATGTTAATTGGGAAAACATCAAAGGGC TAGAGAATGCCAAGCGCTTACTTAAAGAAGCGGTAGTCATGCCGATGAAATATCCCAAGTATTTTACAGGTCTTTTATCACCATGGAAAGGCATTCTTCT TTTTGGTCCTCCTGGTACAGGAAAGACAATGCTTGCAAAGGCCGTTGCTACAGAGTGCAAAACCACATTTTTCAACATCTCTGCATCCTCTGTTGTTAGC AAGTGGCGAGGGGACTCGGAGAAGCTGATAAAGGTCTTATTTGAGCTTGCTAGACACCACGCACCATCAACTATATTCATTGACGAAATAGATGCAATTA TAAGTCAGCGTGGCGGTGAAGGTAAGGGTGAGCATGAAGCAAGCAGGCGTTTGAAGACTGAGCTTCTCATTCAGATGGATGGGTTGATGCGAACAAAGGA TCTTGTATTTGTCCTGGCAGCAACCAATCTCCCATGGGAGTTAGATGGAGCTATGCTGCGGCGTCTTGAGAAGCGAATCCTAGTACCACTTCCGGAGCCA GAAGCAAGAAGAGCAATGTTTAAAGAACTGCTACCGACATCAGGAAAGGGCGAAGAAGAAGAGGCCGCCAACCTTCCCTATGATGTTTTGGTGGAGAGGA CAGAAGGTTTTTCGGGCTCTGATATTCGCTTGCTCTGCAAGGAAGCCGCTATGCAGCCATTAAGACGTGTTATGGCCATCCTTGAAGACAAGGAGGAAAT CGTGCCTGAGGATGAGTTGCCGCAAGTTGGGCCGATAACGGCTGAAGACATAGAGTCAGCTTTGAAGAACACAAGGCCGTCTGCCCATCTTCACGCCCAC CTGTACGAGAAGTTCAACGAGGATTATGGAAGTCAGATTCTCCAGTGA
AA sequence Show only first row Show all	>Lus10038499 pacid=23158481 polypeptide=Lus10038499 locus=Lus10038499.g ID=Lus10038499.BGIv1.0 annot-version=v1.0 MADDEPSVTRWTFPDFKTHYDDKFGRKKAQESRNGQVNGNGSVSNGSSSGIVVANGNGQVKNPSDMAIYEQFRNQQNGSSGRQSETSSNGVAEVPQKSLL PAFDSAETRTLAEGLCRDIIRGSPDVNWENIKGLENAKRLLKEAVVMPMKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS KWRGDSEKLIKVLFELARHHAPSTIFIDEIDAIISQRGGEGKGEHEASRRLKTELLIQMDGLMRTKDLVFVLAATNLPWELDGAMLRRLEKRILVPLPEP EARRAMFKELLPTSGKGEEEEAANLPYDVLVERTEGFSGSDIRLLCKEAAMQPLRRVMAILEDKEEIVPEDELPQVGPITAEDIESALKNTRPSAHLHAH LYEKFNEDYGSQILQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34560			P-loop containing nucleoside t...		Lus10038499 [exp]	0	1
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10020413 [exp]	1.0	0.8925
AT1G47740			PPPDE putative thiol peptidase...		Lus10003951 [exp]	5.0	0.8659
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	10.5	0.8425
AT3G13510			Protein of Unknown Function (D...		Lus10010315 [exp]	11.4	0.8226
AT1G75060			unknown protein		Lus10018805 [exp]	12.8	0.8144
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	13.4	0.8346
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	13.5	0.8685
AT5G64480			unknown protein		Lus10020488 [exp]	15.0	0.8052
AT3G10910			RING/U-box superfamily protein...		Lus10022743 [exp]	16.7	0.8193
AT4G30845			unknown protein		Lus10026098 [exp]	17.8	0.8660

Compare expression of checked genes

Lus10038499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.