Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 308 / 2e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 239 / 3e-66 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 225 / 2e-61 transmembrane receptors;ATP binding (.1.2) AT5G38340 216 / 1e-58 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 211 / 6e-57 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G64070 204 / 5e-55 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16920 205 / 7e-55 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 205 / 7e-55 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G58120 204 / 7e-55 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 204 / 8e-55 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038533 [exp] 680 / 0 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10023272 [exp] 647 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10034697 [exp] 617 / 0 AT5G36930 300 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 611 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10029860 [exp] 605 / 0 AT5G36930 395 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10024886 [exp] 583 / 0 AT5G36930 370 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 576 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 573 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023487 [exp] 570 / 0 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 300 / 7e-88 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 300 / 7e-88 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 296 / 3e-86 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 296 / 3e-86 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 294 / 6e-86 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 291 / 2e-84 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019710 [exp] 278 / 2e-84 AT5G36930 445 / 2e-144 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 287 / 5e-84 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 288 / 1e-83 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 288 / 2e-83 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10038532 pacid=23158501 polypeptide=Lus10038532 locus=Lus10038532.g ID=Lus10038532.BGIv1.0 annot-version=v1.0 ATGCCACCAAGGTCCAGTTTTCCAGCAGTGCCCGCTCTGCTGCTCTTTGCAGCTGCCCAGGCCGTACACTATCTTATAAAGAAGAGATCTGAAACCTCCG ACTCCCCGTCATCTTCTTCATTGTCTCCTTCTTCAACAACTGCTACTCAGAATCGTCCAACTGCAGACTACGAGGTCTTCCTATGTTTCAGAGGCTCCGA TGTCCGTACAACTTTCGCTGATTTCCTCTACAGGTTTTTGGATCATTCCAAGATTCAGACATTTTTCGATGATGTCGAGCTTCAAAAGGGGGAGAAGTTA GCTCCTGCTCTTGTGACGGCTATCGAGGAATCCAAGATATTCATTCCGATCCTTTCCCCTAACTATGCTTCTAGTAAATGGTGCCTTCAAGAACTGGCGC TAATGTACAAGTGTTGGAAGCAAGGAAACGGTCACATCATACTGCCGATTTTCTATATGATGGATCCTAGAGATGTTCCGCATCAAGAGGGTTCTTACAA GAAAACTTTCCAAAGACACAGTAAGAAACTTGACATTGAAACAATTAAGGAATGGAACGAAGCTTTGAAGGGGGGTGGAGAAATGAAGGGATGGTTTGTT CAGGATTCTGATGGGCAAGGAGCTGTCGTGAATAAGGTTTTCACGGAAGTGTGGTCGCATTTAACGAGGAACTACGTGTTAGTAACAGATGATTTGATAG GAATCGATGCTCACGTGACAAGAGTGAAGGAGCTACCACAGTTAGGCTTCGAAGGTGTCAAAATTGTTGGTTTTTGTGGCTTGGGGGACACTAATGAAGG AATCAACATAATAGAAAACAGAATCTGCAAATTGAAGGTTCTTATTGTTCTTGATGATGCAAATGATAAGTTTAAGATTGAAAAAGTTTTCGACGGGAAG CTGGATGGTTTTTGCAAGGGAAGATGTATTATTATGACAAGAGATAGAAGAGTTATGGAGTTCTTTCAACAGTACGAGGTATACGAACCAGAAGAAATGA GTGAAGATCACTCCATTCAACTCTTCAGTAGACATGCCTTTGGAGTTAATCATCCTCCAGAAGAGGACATTGCTTTCTCAATGGAGTTTGTAAAAGCCGG AGCAGGTCTCCCCTTGTCGTTAAAAGTGATAGGATCTCTCTTGCTTCGTAGAGATAGAAGTTTCTGGAGAGCAACATTGAAGCAACTAAAAGACGTACTT CCTTCAGAGGTGCAAGAAACACTGAGGATAAGCTATATGGCGTTGACTCACGAAGAAAAGCAAAGATTTCTTGATATTGCTTGTTTTTTTACAGGTACCG AGGAGCAGTTGACTTTCGAGATGTGGGATAGCTGTCGTTTTCATCCGGAAATTGTGATCGTCACTCTCGTTCAGAGGTCCTTGATAAAACTGAATCGGGC GTATTTTAGCAATAACTGTTGGCCGTTTGAAAATCCTTTTAGTAAAGATGATCTTAGAGAGGTGAGAAATGTTTTCTGGATGCATGATCATGTTAGAGAT CTCGGCAGAAGTATTGTTCGTGAAGATCTTCAACGTCCATGGAAGCGCAGCCGTATGTGGTCCAGTGAGGATGTCTTAGACATGTTGAACAATGGAAAGC TGATATGCCGTCCTACATACTTTAAGTTCACGGATAGACAGTTTGAGAAACTGTCAGGATTAAGGTATCTTGATGTGTGTTATGGAGAATTCGATGGGAG CTTCGAAAGTTTTATCCTGAATTTACGCTGTCTTTGGTTAACATCTTGCATCTCGATTCCCACTGCTCTGAATGTGAAGAAATTAGTAGTTCTGCATCTA GATGGTTGTGGCGTAACAGACGATTGGAGACGCTGGGATCAAATAGAGGAAGCGGAGAAGCTGAAATCTATATCTTTGTGGGGCTGCACTGACTTGGTTT CGGTCCCCAACTCGTCTGGATGCGAAGATCTCGAGTTGTTGAATTTCGTTATGTGTATGAAGATGATTGGAAAACTACACATTGACGGTCTAAAGAATCT AAAAGTGTTGAAACTCATAGGCACTCCTATAACAGAGCTAACCAGTGGTGGCATCGGAGCGAGCTTGACAGAATTGCACGACGATATAGGCATTTTACCC TCCCTAGAAACCTTGTACATGTCGAGTACTGACTTGGAGCTCAAGCAACTGCCAGCACTTCCCACAAGCTTAAAACGGTTATACGTGAAATACCTCTCGT TTCCCTGCATTTCCAACCTTTCCGACCTCGGGAATTTGGAGAAGTTGCGGTTGGATCATTACGAGCATCAGTTTCTGGCAAATATATGGACTTAG
AA sequence Show only first row Show all	>Lus10038532 pacid=23158501 polypeptide=Lus10038532 locus=Lus10038532.g ID=Lus10038532.BGIv1.0 annot-version=v1.0 MPPRSSFPAVPALLLFAAAQAVHYLIKKRSETSDSPSSSSLSPSSTTATQNRPTADYEVFLCFRGSDVRTTFADFLYRFLDHSKIQTFFDDVELQKGEKL APALVTAIEESKIFIPILSPNYASSKWCLQELALMYKCWKQGNGHIILPIFYMMDPRDVPHQEGSYKKTFQRHSKKLDIETIKEWNEALKGGGEMKGWFV QDSDGQGAVVNKVFTEVWSHLTRNYVLVTDDLIGIDAHVTRVKELPQLGFEGVKIVGFCGLGDTNEGINIIENRICKLKVLIVLDDANDKFKIEKVFDGK LDGFCKGRCIIMTRDRRVMEFFQQYEVYEPEEMSEDHSIQLFSRHAFGVNHPPEEDIAFSMEFVKAGAGLPLSLKVIGSLLLRRDRSFWRATLKQLKDVL PSEVQETLRISYMALTHEEKQRFLDIACFFTGTEEQLTFEMWDSCRFHPEIVIVTLVQRSLIKLNRAYFSNNCWPFENPFSKDDLREVRNVFWMHDHVRD LGRSIVREDLQRPWKRSRMWSSEDVLDMLNNGKLICRPTYFKFTDRQFEKLSGLRYLDVCYGEFDGSFESFILNLRCLWLTSCISIPTALNVKKLVVLHL DGCGVTDDWRRWDQIEEAEKLKSISLWGCTDLVSVPNSSGCEDLELLNFVMCMKMIGKLHIDGLKNLKVLKLIGTPITELTSGGIGASLTELHDDIGILP SLETLYMSSTDLELKQLPALPTSLKRLYVKYLSFPCISNLSDLGNLEKLRLDHYEHQFLANIWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10038532 [exp]	0	1
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	4.2	0.9147
AT5G01950			Leucine-rich repeat protein ki...		Lus10003244 [exp]	5.2	0.9310
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	8.5	0.9190
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10035835 [exp]	12.6	0.9154
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	13.4	0.9139
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	15.0	0.9106
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Lus10016657 [exp]	17.3	0.9240
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10002453 [exp]	21.1	0.9233
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	21.7	0.9119
AT2G30105			unknown protein		Lus10031291 [exp]	21.8	0.9080

Compare expression of checked genes

Lus10038532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.