Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 355 / 8e-103 transmembrane receptors;ATP binding (.1.2) AT5G36930 345 / 3e-100 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 332 / 3e-94 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G63870 288 / 2e-81 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 286 / 2e-79 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G69550 286 / 2e-79 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G38850 273 / 3e-76 Disease resistance protein (TIR-NBS-LRR class) (.1) AT2G16870 269 / 1e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G58120 268 / 3e-74 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 263 / 8e-73 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024886 [exp] 1080 / 0 AT5G36930 370 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 992 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 948 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10035674 [exp] 895 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029860 [exp] 867 / 0 AT5G36930 395 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 859 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 858 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10010574 [exp] 855 / 0 AT5G36930 397 / 4e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020533 [exp] 852 / 0 AT1G27170 405 / 1e-122 transmembrane receptors;ATP binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021681 [exp] 405 / 2e-122 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 403 / 1e-121 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 398 / 2e-121 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 400 / 1e-120 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 398 / 4e-120 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 397 / 4e-119 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 392 / 1e-117 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 392 / 2e-117 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 391 / 2e-117 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002200 [exp] 387 / 2e-117 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10038533 pacid=23158195 polypeptide=Lus10038533 locus=Lus10038533.g ID=Lus10038533.BGIv1.0 annot-version=v1.0 ATGGTGTTGCAGAACTGGTCTAGTTTCCCTGCTTTGCCCACAGTGCTTCTCCTTGCAGCCGCCGGTGTTGTACTCTCTCTTATGAAGAAGAGATCCGAAA CCTCTAGGTCTTCATCAACTCTTCCATCACCGTCTTCTTCTTCTTCTTCTTTTACGAATACTACTCAGCCTCTACCTGCTGCAGATTATGAGGTGTTCCT CAGCTTTAGAGGCCCCGACGTCCGCACAACTTTTGCCGATTTTCTCTATAGGTTTTTGGACAATTCGAATATTCGGACCTTTTTCGATGATGAAGAGCTT CGTAAGGGGGAGGAAATTTCCGAATCGCTGTTCAAGGCTATCGAGGAGTCGAAGGTGTACATCCCGATCCTTTCCCCTGGTTATGCTTCTAGTAAGTGGT GTCTGCAGGAGCTAGCTCACATGGTGAAGTGCTGGAAGCAAGGAAATGGCAGCATTCTTCTGCCCATTTTCTTTATGATGGAGCCTAGAGATGTACGGCA TCAAGAGGGTTCTTACAAGAAAGCATTTCGACAGCACAATAAGAAATATGACATAGAAACAGTTAAAGAATGGAAGGGAACTCTCGAGGAGGTCGGGCGA ATGAAGGGATGGCATGTTACAGAGTCCGATGGACAGGGAGCTATAGTAAGGGAAGTTTTTTCTAGTGTGCGGTCACATCTAATGAATGGTTACCTCTTGG TGACTGAGAAGTTGGTGGGGATTGATCTTCATATAGAGCAGGTGACAAATCTGTTGAACCAAGGTGTCAGGATTGTTGGGATAGTTGGTATGGGTGGCCT TGGTAAGACTACCATAGCTATGGCTGTTCGTGACAAAGTCTATGCAAAATTTGAGTATTGCTGCTTTTTGAGAGATGTAAGAGAGACATTATTAGGAAAA GACGGCATTGTTACTTTGCAGAAGCAGATTTTATCCGCCATTCCAGGTTATGATGGAAATATTCAAGATGCAAGTCAAGGAATTCGTGTTATAAAAGATA GAGTATGCAGGCATAGAGCTCTCGTCATAATTGATGATGCCGATGAAAGATTCGAGTTTGAACAAGTCTTGGGGGACTTGGAGGATTTTTCATCAGAAAG TCGCTTTATCATCACAACAAGGAACCAAGAAATTTTGAAGTTTTTCCAGCACTGTGAGTTGTACAATCCTCAAGAGTTGGATCATGAACATTCACTCCAA CTTTTTAGCAGACATGCGTTCGGGTTGAGTTATCCTCCAGAAGACCGTCTGGGTCTGTCTATTGAGTTTCTGAAAGTTGCAACAGGTCTCCCTTTAGCTC TTAAGGTCATAGGGTCGACCTTGAATCGGAAAAATGAGAATTTCTGGAAAGAGAAGTTGAAACAATTGAGCAAGGTACCTTGTGATAAGGTGCAAGAACG ATTGATGATAAGTTTTTTGGACTTGACTCATGAGGAAAAAGAAATTTTCCTTGATATTGCATCCATCTTTATCGGAAAAGAAAAGGAGCATCCTATGTAT ATGTGGAGTGCTTGCGATTTTTATCCGGAAATTGGGGTGGATGCCCTCATTCTTAAGTCATTGATAAAAATCAATGACAAAAATGAGTTTTGGATGCATG ATTCTATCAGAGATCTCGGTAGAGCTATTGTTCGTGAAAAAGATCCATGGAGAGGCAGTAGAATATGGGACAATGAAGATGTGCAAGATATACTGTCGAA TGAAAAGGGAACTGATCGATTGGCAGCACTAAGAGTTCGAATTAAAGGTGGTACCTCTAAGTTAACAGATAGAGGTGGTTTCTGTAAGTTAACAGATAGA CAATTTGAGAAGTTGCCCGGATTAAGGTATCTTGAAGTTATTGATGGAAAACCTGAGGGGAACTTTGAAAGTATTCTCCCAAATATACGTTGGCTTCAAA TGATTGGTTGCGTCTCGAACCCCATTGATTGCGATATGAAGAAATTGGTGATATTCAATCTAGAAGATAGCCAAGTAAGAGATGATTGGAGAGGCTGGGA AAAAATGAAGGTGGCACGCAACCTTAAATCGATAAGGTTATATAACTGTTTTTCCTTGAAAAGGGCTCCGGACTTGTCTCAATGTGAAAATCTAGAGTTG ATAGAAATCGACTTTTGTCCAGAGATGAGTGGGGAACTGCATATCGGTAATTTAGAAAATCTTAAAGTCATTAAGATCTTTTTCACCAAAATAACAGACT TAACTGGTGACATTGGATTGCTTCAGAATCTACAAGAGATTAATGTGTGGCATTCGAAGTTGAGAAAGTTGCCTGATGGTATAAGCAAATTGTCTTCCCT CGTAGTCTTGTACATACCAAAAATGTGGAAGTCAAAAGCTGCACCGACGATACTTCCCACAAGTTTAAAGACGCTAGGCCTCTCATCTTCTTTTATTCCT AATCTTGTGGATATAGACAACTTGGAGAAGTTGGTGTTGCATGATTATCAGCATCAATTTCCAGGGGATATGTGGAGGTTATCCAAGTTGAAGATTCTGG AGTTGTCGAGCTTTCGTTGCGAGAGTCTGTTTGGGGAGAAGGAGGAGGAGGTTGTTGGGAACAAGATGGATGGCCCTTGTTTTATTCTCCCCTCTTCTCT AAACAGCATTGAGATTACAGACAGTATGGAATTGGAGAGGCTGCCGAATCTTGAAAATCTCGATAATTTAATGCTGCTAGTTTTGAGGGACACTAGTGTA CGTGAAATTCATGGTTTGGAAAAGTTGAGGAAGCTGGAAACTCTGGAAATAAGGGAAGCTCCAAATCTGATAGATCTAGCCGGCCTAGAACATCAAAAGC TTCTCAAGAAATTAGTTCTTGTAAGATGTCACGTACTGGAAAAACTGCCCGATTTGTTTACTGACGTTGAAGGGCTCGTGGCAGTGGAGTATTTGGAAAT TGTAGAGTGCAAATCATTTAGAGTGTTGCCGAGTTTACATGATCTCAAGAATCTGAAGACGCTAATAATACGTAAGTGCGAGCAGTTGACCGAGGTTGTA GGGCTCGAGAATATTGGAACACTCCAAGTTTTAGTTATGTGTGGTTTATCGTCGATGAAGATTTCACTGAATCTATCTCATTTCAAGCATTTGCTAGAGT TGAATATTTCAGGAAGCACACAACTGACAGAGATTGTAGGACTTGAAAGGTTGGAGTTGTTAAAAAAGCTATCTATGAGAGGCTGTGAGTCCATTGAGAA ATTGCCAAGCCTCTCTGGACTAAAACATGTTTCGGAAATAGATCTCAGTAGGTGCCGACGGTTGACTGAGGTGGTTGGGCTTGAAGAATTGGAATCACTG AAGGTCCTACTGATGGTTGGCTGCGAATCAATTAAGCAGTTGCCGGATCTATCTTGTTTAAAGCATTTGTGGAGGTTGGAAATTTCTGGTTGCACACAGC TAACTGAAGTTACTGGAATCCAAAATCTGAAGGACTTGACCGACCTAGAGATAGATGAAAGATTCAACATTCCACCACGGAGGGGTTTATAA
AA sequence Show only first row Show all	>Lus10038533 pacid=23158195 polypeptide=Lus10038533 locus=Lus10038533.g ID=Lus10038533.BGIv1.0 annot-version=v1.0 MVLQNWSSFPALPTVLLLAAAGVVLSLMKKRSETSRSSSTLPSPSSSSSSFTNTTQPLPAADYEVFLSFRGPDVRTTFADFLYRFLDNSNIRTFFDDEEL RKGEEISESLFKAIEESKVYIPILSPGYASSKWCLQELAHMVKCWKQGNGSILLPIFFMMEPRDVRHQEGSYKKAFRQHNKKYDIETVKEWKGTLEEVGR MKGWHVTESDGQGAIVREVFSSVRSHLMNGYLLVTEKLVGIDLHIEQVTNLLNQGVRIVGIVGMGGLGKTTIAMAVRDKVYAKFEYCCFLRDVRETLLGK DGIVTLQKQILSAIPGYDGNIQDASQGIRVIKDRVCRHRALVIIDDADERFEFEQVLGDLEDFSSESRFIITTRNQEILKFFQHCELYNPQELDHEHSLQ LFSRHAFGLSYPPEDRLGLSIEFLKVATGLPLALKVIGSTLNRKNENFWKEKLKQLSKVPCDKVQERLMISFLDLTHEEKEIFLDIASIFIGKEKEHPMY MWSACDFYPEIGVDALILKSLIKINDKNEFWMHDSIRDLGRAIVREKDPWRGSRIWDNEDVQDILSNEKGTDRLAALRVRIKGGTSKLTDRGGFCKLTDR QFEKLPGLRYLEVIDGKPEGNFESILPNIRWLQMIGCVSNPIDCDMKKLVIFNLEDSQVRDDWRGWEKMKVARNLKSIRLYNCFSLKRAPDLSQCENLEL IEIDFCPEMSGELHIGNLENLKVIKIFFTKITDLTGDIGLLQNLQEINVWHSKLRKLPDGISKLSSLVVLYIPKMWKSKAAPTILPTSLKTLGLSSSFIP NLVDIDNLEKLVLHDYQHQFPGDMWRLSKLKILELSSFRCESLFGEKEEEVVGNKMDGPCFILPSSLNSIEITDSMELERLPNLENLDNLMLLVLRDTSV REIHGLEKLRKLETLEIREAPNLIDLAGLEHQKLLKKLVLVRCHVLEKLPDLFTDVEGLVAVEYLEIVECKSFRVLPSLHDLKNLKTLIIRKCEQLTEVV GLENIGTLQVLVMCGLSSMKISLNLSHFKHLLELNISGSTQLTEIVGLERLELLKKLSMRGCESIEKLPSLSGLKHVSEIDLSRCRRLTEVVGLEELESL KVLLMVGCESIKQLPDLSCLKHLWRLEISGCTQLTEVTGIQNLKDLTDLEIDERFNIPPRRGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	0	1
AT1G58230			binding (.1)		Lus10042866 [exp]	3.0	0.9190
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	4.6	0.8915
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	5.5	0.8981
AT2G46560			transducin family protein / WD...		Lus10005974 [exp]	5.5	0.8766
AT5G23490			unknown protein		Lus10019229 [exp]	6.3	0.8710
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	8.0	0.8876
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10023353 [exp]	9.4	0.8730
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	12.2	0.8797
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	15.4	0.8738
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	16.1	0.8662

Compare expression of checked genes

Lus10038533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.