Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 153 / 9e-47 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 139 / 1e-41 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 134 / 1e-39 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 124 / 1e-35 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT3G60490 124 / 4e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 119 / 2e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 122 / 3e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 120 / 4e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 115 / 1e-32 AP2_ERF ATERF38 ERF family protein 38 (.1) AT1G77200 113 / 4e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002801 [exp] 147 / 2e-44 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 130 / 9e-38 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 130 / 6e-37 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 121 / 3e-35 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 118 / 2e-33 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10007799 [exp] 115 / 2e-33 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 115 / 2e-32 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10025834 [exp] 113 / 2e-31 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 111 / 8e-31 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043900 [exp] 145 / 8e-44 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 140 / 6e-42 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 139 / 3e-41 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 131 / 4e-38 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 127 / 2e-36 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 125 / 5e-36 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 126 / 8e-36 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 125 / 1e-35 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 124 / 4e-35 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 122 / 5e-35 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10038607 pacid=23143006 polypeptide=Lus10038607 locus=Lus10038607.g ID=Lus10038607.BGIv1.0 annot-version=v1.0 ATGAAAGCGAAGAAGGTGTACAGGGGAGTGAGAATGAGGAGTTGGGGGAAATGGGTATCGGAGATAAGGGAGCCCCGCAAGAAATCCCGCATTTGGCTCG GCACTTACCCGACCCCTGAGATGGCAGCTCGCGCTCACGACGTTGCAGCTTTAACCCTCAAAAAGGGTAATTACTCCTCAATCCTCAATTTCCCAGAGAT GGCACATTCCCTGCCCCGTCCCCTTTCTCTGGCACCTCGCCACGTTCAAGCCGCAGCAGCAAAGGCCGCCCACATGGACATGACTACTACTACTTCTGGC CCCACCACCGCCATTAATCTTGCGCCTTCTTCCTTGTCGTCGTCTTCTGCGGATCATGAAGAGGAGGGATTGCTGAGCGAGATTGTGGAGCTCCCCTGTT TGGGTGATGTCCGGGATGATCAGAAGAACAATGAGTTGGTGTTGGTTGACTCCTCGGCGGAAGGGTGGTTGCTGTACCCGCCGCCGTGGGATGATGATGA TGATGAATTTGGGGGGGATATTGTACCCTTTTGGGAGAAATGA
AA sequence Show only first row Show all	>Lus10038607 pacid=23143006 polypeptide=Lus10038607 locus=Lus10038607.g ID=Lus10038607.BGIv1.0 annot-version=v1.0 MKAKKVYRGVRMRSWGKWVSEIREPRKKSRIWLGTYPTPEMAARAHDVAALTLKKGNYSSILNFPEMAHSLPRPLSLAPRHVQAAAAKAAHMDMTTTTSG PTTAINLAPSSLSSSSADHEEEGLLSEIVELPCLGDVRDDQKNNELVLVDSSAEGWLLYPPPWDDDDDEFGGDIVPFWEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10038607 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Lus10031495 [exp]	6.7	0.8573
AT4G37810			unknown protein		Lus10019254 [exp]	7.3	0.8795
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	8.1	0.8236
AT4G28100			unknown protein		Lus10018524 [exp]	9.5	0.8498
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10026611 [exp]	10.2	0.8598
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10030452 [exp]	18.4	0.8658
AT5G38760			Late embryogenesis abundant pr...		Lus10026292 [exp]	19.8	0.8626
AT2G30620			winged-helix DNA-binding trans...		Lus10005534 [exp]	21.5	0.8070
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	23.0	0.7918
AT4G10810			unknown protein		Lus10010114 [exp]	23.2	0.8391

Compare expression of checked genes

Lus10038607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.