Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32730 352 / 4e-109 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G11510 315 / 5e-95 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G09370 254 / 4e-75 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G02320 249 / 4e-73 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT4G00540 198 / 7e-56 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT4G18770 153 / 5e-40 MYB ATMYB98 myb domain protein 98 (.1) AT3G27785 144 / 1e-36 MYB PGA37, ATMYB118 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) AT5G58850 138 / 6e-35 MYB ATMYB119 myb domain protein 119 (.1) AT5G11050 135 / 8e-34 MYB ATMYB64 myb domain protein 64 (.1) AT3G09230 133 / 2e-33 MYB ATMYB1 myb domain protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037898 [exp] 1188 / 0 AT4G32730 266 / 4e-77 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10011687 [exp] 524 / 1e-168 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 494 / 1e-160 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10024394 [exp] 250 / 8e-74 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10025351 [exp] 248 / 4e-73 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10008010 [exp] 189 / 3e-52 AT5G02320 237 / 3e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Lus10042111 [exp] 149 / 2e-38 AT4G18770 249 / 8e-79 myb domain protein 98 (.1) Lus10002384 [exp] 147 / 4e-38 AT4G18770 250 / 7e-79 myb domain protein 98 (.1) Lus10027695 [exp] 149 / 2e-37 AT4G18770 276 / 1e-87 myb domain protein 98 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241700 [exp] 449 / 3e-143 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.018G038000 [exp] 414 / 5e-130 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G085600 [exp] 253 / 2e-74 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.014G079300 [exp] 248 / 1e-72 AT4G32730 266 / 5e-80 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.003G123800 [exp] 207 / 1e-58 AT3G09370 231 / 3e-70 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Potri.015G077700 [exp] 147 / 9e-38 AT4G18770 300 / 4e-98 myb domain protein 98 (.1) Potri.012G082000 [exp] 147 / 9e-38 AT4G18770 268 / 2e-85 myb domain protein 98 (.1) Potri.005G118500 [exp] 146 / 1e-37 AT4G18770 234 / 2e-72 myb domain protein 98 (.1) Potri.001G347200 [exp] 144 / 9e-37 AT3G27785 223 / 8e-68 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Potri.009G044100 [exp] 144 / 1e-36 AT5G58850 224 / 5e-68 myb domain protein 119 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038623 pacid=23143009 polypeptide=Lus10038623 locus=Lus10038623.g ID=Lus10038623.BGIv1.0 annot-version=v1.0 ATGGGCACTGACAAATTAGTTTCTACTCCCTCGGATGGGGTGAGTAATGGTGCTCAGAAAAGCCGGCCTCATCAGGGGAGAACCACTGGTCCTACTAGGC GTTCAACAAGGGGCCAATGGACAGCTGAAGAGGATGAGATTCTATGCCAGGCTGTTAAACACTTCAAGGGAAAGAATTGGAAAAAAATTGCTTGGCCTGA AAGGATTCTGACTGAATATTGTTCATCTGTTATTGCTATCTTGTCTTCAGCTGAATGCTTCAAGGATCGAACTGATGTCCAGTGCCTGCATAGATGGCAG AAAGTCTTAAATCCAGAACTTGTGAAAGGGCCATGGTCAGAACAGGAAGATGAAATAATAATTGCATTGGTCCACAAGTATGGATCAACAAAGTGGTCTG CAATTGCTCAACATTTACCTGGCCGCATTGGGAAGCAATGTAGAGAAAGGTGGCACAATCATCTTAATCCGTCAATAAACAAAGAGGCATGGACTCAGGA TGAGGAGCTATCCTTGATTCGTGCCCACCAGATATATGGCAACAGATGGGCAGAGCTCTCAAAATTCTTGCCTGGAAGGACAGATAATTCTATAAAGAAC CACTGGAACAGTTCTGTGAAAAAGAAGTTGGAGTCTTACTTTGCATCAGGTCTACTAGACCAGGTGCAAGGCTTTCCTCCAGTTGTAAATCAAAATCAAT CCACACCTTCATCTTCTTTGAGGCTGCAGAATAGTGGAGATGATAGTTACAGTAGTCGAAAATGTGGCACTGAGGCAGAGGAAATATCTGAATGCAGTCA AGAGTCGAATGTCATGGCTTGTTCTCAGTCAGCTAGCGATTTGGGTAATTCCATTGTCAATTCTAGAGAAGAAGTCCATTTACCACAAGATTCTCGCCTT GGAAAGGAACAACATTATTGTTCAGAGCAATATAACACATCACTTGGAAATGTCCCCTTTTCCAACCCAGAAGTTCCTTGTCAAGCAGGTTGCTCCTCAA ACTTTCTTCTGCAGAACTATCCTCATATGTCAGCAAGTGCTGCTTACGAACTTAACTCAGAGGGTCCATCAAACATGCATCCAATGGAACTAGGAGAAGG GTTTTCAGGTGCTCATTGTATAGCCGCTCATGAAAGCCAAGAAGTAGCCAATGTTTCATTGCCAGATTCAATGGGTTTCAGTGCTCCTGTTTGTTTGGAA GATATGGGTGCAGATCTGCAGGATACAGGATCTTTATGCTATGAGCCTCCTCGGTTCCCAATTTTGGATCTTCCGTTTCTCAATTGTGATCTTGTACAAC CAGATAGTCATCTTCAGCAAGTGTACAGTCCTCTTGGTCTTAGGCAGTTTCTGATGTCTTCATCCAACTGCATCAGTCCGTTTAGGCTGTGCGATTCACC AACTCTAAGTACAAGTCCTGATGCAGTTCTGAAGAGTGCTGCTAAGTCTTTCACTTGTACACCATCCATTTTGAAGAAAAGGACCCGAGATTTGTTGTCG CCTTTGTCAGAAACACGAAAAGACAAAAGGCTTGGTACTGGCATTGCTTCCACTTTGGCGAAAGAGTGTCAAAGTCTGGATGCTATGTTTGATGAGACAG AGACTGATGTGATATCTTTGATGTCTAACAAGAAAAGTAAGCACGCACCTTGGTTTGAAGATAAAGAAAATTTAGATCCTTCTCTTCTTGATGGAAAAGA GAAGCGGCAAGAACTTTTTATTGTTCCAGAGGACAGTGATAACTGCGATAACACCCAAAAGAACGTGGATAATGAAATCAATTGCAGTCGTCCCAACATC AAAGATCATCCGGGTGTTGGTTACCAAATTCCTTCAAGAGTAGTTGATGATGAAAGCTCGAATGATCTGTCACTATATTCTCCCGATCCTCAAACGCGAA GAAGCTTGGTTGCTTCATCAGAAAAGGTTGTTCCATCTGGAAATCCTAACACAGTTACAGCAACAGAACTTACATCTGTGCCTCCATTGACAACTGAGGA GAATACAGTTGCTAACACTTGGAATGATACTGCGGTTGAAAATTATAGCATCTTTGGTGGGACTCCTTACAAGAGAAGCATTGAATCTCCGTCAGCATGG AAATCTCCATGGTTCATAAACTCCTTCATCGATGGACAAATGATTGACAAAGACATCCCAGTCCAGGATATTGGATATCACTACGACGCTCTCTCGCTTT TGAAGCAGTTCAGCGAGCAAACTGCTGCTGCATGTGCTAATGCCATGGAAGTTCTAAGGGATGAAACTCCCCAAAGCACAAGGAAAGGAAGAGGAAAGAA GAGCCTGAGTTCGGACCAAGATGAGTGTTATAATGGTTCCCATTTGGCGAATATCACGAGCAAAGGAAGAGTGCTGGAGTTCAGCGAATGCGGAACACCT GAGAAAGGAATAATGGAGAAGGTGAAGTGTTATAATACTACTACTACAACCTCAGGTGCAGTGAGCACCTTGTCGACACCGCCTTCCTCGTCCTCATACC TGTTGAGGAGTTTCAGATAA
AA sequence Show only first row Show all	>Lus10038623 pacid=23143009 polypeptide=Lus10038623 locus=Lus10038623.g ID=Lus10038623.BGIv1.0 annot-version=v1.0 MGTDKLVSTPSDGVSNGAQKSRPHQGRTTGPTRRSTRGQWTAEEDEILCQAVKHFKGKNWKKIAWPERILTEYCSSVIAILSSAECFKDRTDVQCLHRWQ KVLNPELVKGPWSEQEDEIIIALVHKYGSTKWSAIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQDEELSLIRAHQIYGNRWAELSKFLPGRTDNSIKN HWNSSVKKKLESYFASGLLDQVQGFPPVVNQNQSTPSSSLRLQNSGDDSYSSRKCGTEAEEISECSQESNVMACSQSASDLGNSIVNSREEVHLPQDSRL GKEQHYCSEQYNTSLGNVPFSNPEVPCQAGCSSNFLLQNYPHMSASAAYELNSEGPSNMHPMELGEGFSGAHCIAAHESQEVANVSLPDSMGFSAPVCLE DMGADLQDTGSLCYEPPRFPILDLPFLNCDLVQPDSHLQQVYSPLGLRQFLMSSSNCISPFRLCDSPTLSTSPDAVLKSAAKSFTCTPSILKKRTRDLLS PLSETRKDKRLGTGIASTLAKECQSLDAMFDETETDVISLMSNKKSKHAPWFEDKENLDPSLLDGKEKRQELFIVPEDSDNCDNTQKNVDNEINCSRPNI KDHPGVGYQIPSRVVDDESSNDLSLYSPDPQTRRSLVASSEKVVPSGNPNTVTATELTSVPPLTTEENTVANTWNDTAVENYSIFGGTPYKRSIESPSAW KSPWFINSFIDGQMIDKDIPVQDIGYHYDALSLLKQFSEQTAAACANAMEVLRDETPQSTRKGRGKKSLSSDQDECYNGSHLANITSKGRVLEFSECGTP EKGIMEKVKCYNTTTTTSGAVSTLSTPPSSSSYLLRSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10038623 [exp]	0	1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10004805 [exp]	3.2	0.8808
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Lus10006218 [exp]	3.5	0.8361
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	4.9	0.8755
AT1G09660			RNA-binding KH domain-containi...		Lus10035768 [exp]	6.0	0.8448
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	6.5	0.8618
AT5G50840			unknown protein		Lus10040383 [exp]	12.0	0.8534
AT4G10050			esterase/lipase/thioesterase f...		Lus10041054 [exp]	13.1	0.8618
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10024562 [exp]	17.5	0.8474
AT4G15030			unknown protein		Lus10029514 [exp]	19.5	0.8256
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10020116 [exp]	24.7	0.8271

Compare expression of checked genes

Lus10038623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.