Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 523 / 0 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 419 / 7e-144 Transmembrane amino acid transporter family protein (.1) AT5G40780 190 / 2e-55 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 187 / 7e-54 Transmembrane amino acid transporter family protein (.1) AT1G71680 167 / 1e-46 Transmembrane amino acid transporter family protein (.1) AT1G61270 166 / 2e-46 Transmembrane amino acid transporter family protein (.1) AT2G39890 166 / 2e-46 ATPROT1, ProT1 proline transporter 1 (.1.2) AT1G24400 166 / 4e-46 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 165 / 7e-46 Transmembrane amino acid transporter family protein (.1) AT2G36590 162 / 8e-45 ATPROT3, ProT3 proline transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037913 [exp] 484 / 5e-170 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 474 / 2e-165 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 400 / 1e-136 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10038640 [exp] 288 / 1e-93 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037914 [exp] 225 / 8e-69 AT1G08230 112 / 6e-31 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10014605 [exp] 174 / 2e-49 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 168 / 5e-47 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 168 / 5e-47 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 164 / 2e-45 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026700 [exp] 726 / 0 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 658 / 0 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 587 / 0 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.001G093600 [exp] 438 / 2e-151 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G138100 [exp] 429 / 7e-148 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 244 / 6e-76 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G179000 [exp] 187 / 4e-54 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 177 / 1e-50 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 177 / 3e-50 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335300 [exp] 166 / 3e-46 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10038639 pacid=23143037 polypeptide=Lus10038639 locus=Lus10038639.g ID=Lus10038639.BGIv1.0 annot-version=v1.0 ATGGCTCCAAACTCCATGAACATTTCCACAGCAGACAAGCACAACACTGACTCTCCTCCACAGCTTGATGCTGGAGCTTTGTTTGTCCTGCAATCAAAAG GATCATGGGTTCATTGTGGGTATCATTTGACAACATCAATAGTTGGTCCAGTTATATTCAGTCTTCCATTTGCTCTGGGTTTGCTTGGCTGGGGACCTGG AATTGCCTGCATATCTCTATCAGCACTAGTAACTTTCTACTCCTACAATCTCTTGTCTTTGGTTCTGGAGCATCATGCTCAGCTAGGAAGGCGCCAGCTC CGATTTCGGGACATGGCTGAAGATATCCTAGGACCTGGATGGGGGAAGTTCTTTGTGGGGCCACTTCAGTTTGCTATATGCTATGGTGCTGTTATTGCTT GCACCCTTCTTGGTGGACAGTGCCTTAAGTTCGTTTACTTGCTGTACAGCTCAAATGGTGGAATGCAGCTATACAAGTTCATAGTAATATTTGGTGGTGC AACGTTGGTTTTGGCTCAAATGCCATCTTTCCACTCTCTGAGGCATATCAACCTTGTCTCTTTGATGCTTTGCCTTGCCTACAGTGCTTGTGCCACGGCT GGCTCTATATACATTGGAAATTCAAGCAAAGCGCCTCCAAGGGACTACTCGGTGAATGGTTCTCAACTGAACCACTTCTTTGGCTCCATCAATGGGGTTT CAATCATTGCCACAACTTTTGGTAGTGGGATCATCCCTGAAATACAGGCAACACTTGCTCCACCAGTGATAGGCAAAATGTTCAAAGGCTTGTGCATTTG CTATGCTGTCATAATCTCCACATATTTCAGTGTTGCAGTCTCTGGCTACTGGACATTTGGGAATTCCTCCAAATCGATCATTCTCACAAACTTCATGGAT GATGATGGGAAACCATTGTTGCCAGTTTGGTTCCTTCTCTTGACCAACATCTTTGCTCTCATGCAGTTGGCTGCCATCACTGTGATCTACTTGCAGCCAA CAAACGAGATGTTTGAGAGATGGTTTGCAGACCCAAAGAAGCACCAATTTGCGGCAAGGAACGTAGCCCCACGGCTGGTTTTTAGATCACTGACAGTGGT AGTGGCTACACTGATTGCAGCAATGCTGCCTTTCTTTGGGGATATCATGGCCTTCTTTGGAGCATTCGGATGCATCCCTTTGGACTACATCCTGCCAATG GTTTTCTATAACACAACGTTCAAGCCTCCGAAGAAAAGCCTCATCTTTTGGGGGAATACAACCATTGCTGTAATTTCATCCATTCTGGCTGCAGTTGGTG GAGTGGCCTCAGTTAGACAGATGATACTTGACGCCAAGACTTACAGCATATTTGCTGATGTTACAATGTGA
AA sequence Show only first row Show all	>Lus10038639 pacid=23143037 polypeptide=Lus10038639 locus=Lus10038639.g ID=Lus10038639.BGIv1.0 annot-version=v1.0 MAPNSMNISTADKHNTDSPPQLDAGALFVLQSKGSWVHCGYHLTTSIVGPVIFSLPFALGLLGWGPGIACISLSALVTFYSYNLLSLVLEHHAQLGRRQL RFRDMAEDILGPGWGKFFVGPLQFAICYGAVIACTLLGGQCLKFVYLLYSSNGGMQLYKFIVIFGGATLVLAQMPSFHSLRHINLVSLMLCLAYSACATA GSIYIGNSSKAPPRDYSVNGSQLNHFFGSINGVSIIATTFGSGIIPEIQATLAPPVIGKMFKGLCICYAVIISTYFSVAVSGYWTFGNSSKSIILTNFMD DDGKPLLPVWFLLLTNIFALMQLAAITVIYLQPTNEMFERWFADPKKHQFAARNVAPRLVFRSLTVVVATLIAAMLPFFGDIMAFFGAFGCIPLDYILPM VFYNTTFKPPKKSLIFWGNTTIAVISSILAAVGGVASVRQMILDAKTYSIFADVTM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038639 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10007823 [exp]	1.7	0.8291
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037087 [exp]	2.4	0.8338
AT1G55200			Protein kinase protein with ad...		Lus10041284 [exp]	6.0	0.8121
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Lus10017603 [exp]	7.5	0.7758
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10028561 [exp]	8.5	0.7776
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	9.4	0.7788
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	9.8	0.7918
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	10.2	0.7676
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10035704 [exp]	11.1	0.7709
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	14.5	0.7795

Compare expression of checked genes

Lus10038639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.