Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08230 198 / 6e-59 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G41800 142 / 5e-38 Transmembrane amino acid transporter family protein (.1) AT2G39890 74 / 3e-14 ATPROT1, ProT1 proline transporter 1 (.1.2) AT5G40780 70 / 5e-13 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT2G36590 69 / 1e-12 ATPROT3, ProT3 proline transporter 3 (.1) AT1G48640 66 / 2e-11 Transmembrane amino acid transporter family protein (.1) AT3G55740 65 / 3e-11 ATPROT2, ProT2 proline transporter 2 (.1.2) AT1G61270 59 / 2e-09 Transmembrane amino acid transporter family protein (.1) AT1G10010 54 / 8e-08 AAP8, ATAAP8 amino acid permease 8 (.1) AT1G67640 52 / 3e-07 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037914 [exp] 468 / 5e-165 AT1G08230 112 / 6e-31 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10038639 [exp] 288 / 1e-93 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10009386 [exp] 236 / 2e-73 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10003903 [exp] 155 / 9e-43 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10037913 [exp] 147 / 5e-40 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10001908 [exp] 137 / 3e-36 AT5G41800 369 / 3e-125 Transmembrane amino acid transporter family protein (.1) Lus10020537 [exp] 99 / 5e-22 AT1G27170 404 / 6e-121 transmembrane receptors;ATP binding (.1.2) Lus10037248 [exp] 59 / 3e-09 AT1G10010 563 / 0.0 amino acid permease 8 (.1) Lus10041580 [exp] 59 / 3e-09 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026700 [exp] 292 / 3e-95 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026600 [exp] 249 / 2e-78 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 232 / 4e-72 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.003G138100 [exp] 155 / 8e-43 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G093600 [exp] 152 / 9e-42 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.005G219300 [exp] 101 / 3e-23 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.015G091600 [exp] 67 / 7e-12 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 62 / 2e-10 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G128300 [exp] 59 / 3e-09 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 54 / 7e-08 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10038640 pacid=23143097 polypeptide=Lus10038640 locus=Lus10038640.g ID=Lus10038640.BGIv1.0 annot-version=v1.0 ATGGGGACTACGGTTCCAAACTCCATGACTGGTGCTACTGCAGCAAGCGACCAAGAAATTAATCAGCTTCCACCACCAAAAGAACTGGATGCTGGAGCTT TGTTTATGCTGAAATCAGAAGGTTTTTCCTTTTTCCTCACCATGATTCCTTGTTCAGTTTTTAAAATTCTTGATGATGTTTCCGGTAGGATTGTGGGTGC ACTGTGGAGATCACTTCACAACATCAATCGTAGCCCCGGCACTTCTGAGCCTACCCTTTGCTTTTTCTCTATTGGACCTAAATGGGGGAAGTACTTAGTT GGTCCCCTCCAAATGGGGTATGTAATGGTTCTGTGGTTGCCAGTATTCTTCTTGGAGGGCACAGGGCAGAGACTTAAGTTCATGTACTTGCTGTACAGGC CGAATGGAGGGATGAAGCTGTACCATTTCATAAGCATATTTGGAGGCATGACAATGTTGTTGGCACAGATGCCGTCCTTCCACTCATTAAGACATATTAA CCTGGTTTCTATCTTCCTTTGCCTTGCTTATAGCACTTGTGCCACTGCTGCTTCAGTCCATATCGGCAACTATAGCACCGCCAGTGAAAGGGAAGATGTT CAAGGGATTGTGCTTGTGTTTTGCGGTAGTAGTTTCAACTTATTTCAGCGTTGCTATATCTGGATTTTGGGCTTTTGGAAACAAAGCTCAGGGAACTGTG CTTTCTTCATGGAGGACATGTTGTTGCCCAGGTGGTTCCTTGTCATGATCAATGCCTTCACTCACTCCCAAGTCTCAGCTGTCACCCTCGTGTACCTGCA GCCGACGAACGAGGTGTTGGAGAAATGGTGTGCGGACCCAAAAGAGAAGCAATTTGCAGCGAGGAATGTGGTACCGAGGTTGTTGTGCCGGACGTTGGCT GTGATTGGAGCCACATTCTTGACAGCGTTGCTGCCTTTCTTTGGTGACATCATGGCTTTGTTCGGGGCTTTCGCTTGTATTCCTCTCAACTTCATACTGC CCATGATTTTCTACATATCACCTTCACCGCCGAGAAACGGTGCAGTGTTGTGGATACACAGGGCGATAGTGGTGGTTTCGTTGGTTTTGGTGGCGGTTGG TGTCGTTGCCTCTGTTCGACAGATTGTTCGTGATGTCAACACCTACAGCTTGTTTGCTAATGTCTGA
AA sequence Show only first row Show all	>Lus10038640 pacid=23143097 polypeptide=Lus10038640 locus=Lus10038640.g ID=Lus10038640.BGIv1.0 annot-version=v1.0 MGTTVPNSMTGATAASDQEINQLPPPKELDAGALFMLKSEGFSFFLTMIPCSVFKILDDVSGRIVGALWRSLHNINRSPGTSEPTLCFFSIGPKWGKYLV GPLQMGYVMVLWLPVFFLEGTGQRLKFMYLLYRPNGGMKLYHFISIFGGMTMLLAQMPSFHSLRHINLVSIFLCLAYSTCATAASVHIGNYSTASEREDV QGIVLVFCGSSFNLFQRCYIWILGFWKQSSGNCAFFMEDMLLPRWFLVMINAFTHSQVSAVTLVYLQPTNEVLEKWCADPKEKQFAARNVVPRLLCRTLA VIGATFLTALLPFFGDIMALFGAFACIPLNFILPMIFYISPSPPRNGAVLWIHRAIVVVSLVLVAVGVVASVRQIVRDVNTYSLFANV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10038640 [exp]	0	1
AT1G32120			unknown protein		Lus10014806 [exp]	3.7	0.8911
AT1G77280			Protein kinase protein with ad...		Lus10039518 [exp]	7.5	0.9049
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	8.9	0.9043
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	16.9	0.9042
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10017283 [exp]	20.0	0.8787
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Lus10032822 [exp]	22.4	0.8911
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	24.7	0.8984
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	27.4	0.8986
					Lus10008301 [exp]	27.6	0.9005
AT1G22540			Major facilitator superfamily ...		Lus10008252 [exp]	31.3	0.8859

Compare expression of checked genes

Lus10038640 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.