Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75790 164 / 3e-47 SKS18 SKU5 similar 18 (.1) AT4G12420 163 / 1e-46 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 158 / 1e-44 SKS1 SKU5 similar 1 (.1) AT4G22010 154 / 2e-43 SKS4 SKU5 similar 4 (.1) AT5G66920 152 / 7e-43 SKS17 SKU5 similar 17 (.1) AT5G48450 150 / 1e-41 SKS3 SKU5 similar 3 (.1) AT5G51480 149 / 2e-41 SKS2 SKU5 similar 2 (.1) AT4G38420 142 / 4e-39 SKS9 SKU5 similar 9 (.1) AT4G37160 142 / 7e-39 SKS15 SKU5 similar 15 (.1) AT3G13390 140 / 2e-38 SKS11 SKU5 similar 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037941 [exp] 286 / 1e-93 AT4G12420 519 / 2e-179 Cupredoxin superfamily protein (.1.2) Lus10023539 [exp] 193 / 1e-57 AT4G12420 496 / 4e-170 Cupredoxin superfamily protein (.1.2) Lus10040424 [exp] 191 / 3e-57 AT5G48450 468 / 5e-159 SKU5 similar 3 (.1) Lus10004339 [exp] 167 / 8e-48 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10028921 [exp] 166 / 1e-47 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10038239 [exp] 165 / 4e-47 AT5G48450 858 / 0.0 SKU5 similar 3 (.1) Lus10025860 [exp] 162 / 3e-46 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10032241 [exp] 161 / 8e-46 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 159 / 2e-45 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032100 [exp] 224 / 1e-69 AT5G48450 461 / 3e-156 SKU5 similar 3 (.1) Potri.008G032200 [exp] 200 / 4e-60 AT4G12420 472 / 2e-160 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 165 / 2e-47 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.003G112700 [exp] 164 / 5e-47 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.015G127200 [exp] 164 / 6e-47 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 160 / 1e-45 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.002G021000 [exp] 155 / 5e-44 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.002G227600 [exp] 152 / 1e-42 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 151 / 2e-42 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.014G177700 [exp] 150 / 1e-41 AT5G48450 885 / 0.0 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10038672 pacid=23143098 polypeptide=Lus10038672 locus=Lus10038672.g ID=Lus10038672.BGIv1.0 annot-version=v1.0 ATGGCTTCCCTGAGCTTGCATGGGAGCCTTGTGGTGATTCTAGCAATTGTAGCCCCAGGAGCGGATGGAATGTTGCACTTGACACCACCCTCGATCCCAT CACTGTCCAACAACCTGAATGGGTTACAGCAGAGGCTCAACTCCTGGCAGGATGGAGTTTCAGGAACAAACTGTCCAATCCAGCCTGGTTCAAACTGGAC TTATCAATTTCAAACCAAGGATCAGATTGGGACCTTCTTCTACTTCCCATCACTCAACTTCCACAAGGCTGCCGGTGGATTCGGGGCAATTCGTGTCTAT AATCGAGCAGTCATTGCTGTTCCTTTCGACAGGCCTGACAATGAGTTTGATCTTCTCATTGGTGATTGGTTCTACGATAACTACCAGGGCCCTCCTGACA TTATGCTGATGAATGGCAAAGGTCCTTATGAACACAAGCTGACCAAAGACTATGAATCCTTCACTGTCACATCAGGGAAGACTTACAGATTCAGGATATC GAATGTTGGAACTGCACTCAACAATGTCTCCTACACCACCCCTGACACGCCCCTGAAGGTAGCAGATCAATTCGACAACGGGTCAGGAGTGTACCAACTA GACTGGTTCCCAACAAACTCTGTGAACCAGCAAGCTGCACAAGGAGTCTCGGTCGTTAGCGGGACCCACAAAAGATGGATCGAGCTCGTGGTCCTCAATG CCATGAACGGATTGGTACTTGGGTCAGGAAATGTACATTCGAGTGCACGATGA
AA sequence Show only first row Show all	>Lus10038672 pacid=23143098 polypeptide=Lus10038672 locus=Lus10038672.g ID=Lus10038672.BGIv1.0 annot-version=v1.0 MASLSLHGSLVVILAIVAPGADGMLHLTPPSIPSLSNNLNGLQQRLNSWQDGVSGTNCPIQPGSNWTYQFQTKDQIGTFFYFPSLNFHKAAGGFGAIRVY NRAVIAVPFDRPDNEFDLLIGDWFYDNYQGPPDIMLMNGKGPYEHKLTKDYESFTVTSGKTYRFRISNVGTALNNVSYTTPDTPLKVADQFDNGSGVYQL DWFPTNSVNQQAAQGVSVVSGTHKRWIELVVLNAMNGLVLGSGNVHSSAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	0	1
					Lus10022938 [exp]	1.4	0.9025
AT2G40410			Staphylococcal nuclease homolo...		Lus10041146 [exp]	2.4	0.8391
					Lus10013650 [exp]	4.5	0.8606
AT3G28390		ABCB18, PGP18	ATP-binding cassette B18, P-gl...		Lus10043069 [exp]	6.1	0.6487
					Lus10039764 [exp]	6.9	0.8156
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	7.1	0.6755
					Lus10013649 [exp]	7.7	0.7981
					Lus10008904 [exp]	8.5	0.7490
AT1G08030		AQC1, TPST	active quiescent center1, tyro...		Lus10016093 [exp]	10.4	0.7762
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	10.6	0.7702

Compare expression of checked genes

Lus10038672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.