Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39130 524 / 0 Transmembrane amino acid transporter family protein (.1) AT3G54830 471 / 3e-163 Transmembrane amino acid transporter family protein (.1) AT5G02170 324 / 3e-106 Transmembrane amino acid transporter family protein (.1.2) AT5G02180 318 / 3e-103 Transmembrane amino acid transporter family protein (.1) AT3G09340 313 / 9e-102 Transmembrane amino acid transporter family protein (.1) AT3G09330 306 / 3e-99 Transmembrane amino acid transporter family protein (.1) AT2G41190 264 / 7e-83 Transmembrane amino acid transporter family protein (.1) AT3G28960 195 / 8e-58 Transmembrane amino acid transporter family protein (.1) AT5G15240 191 / 3e-56 Transmembrane amino acid transporter family protein (.1.2) AT5G16740 150 / 7e-41 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037974 [exp] 580 / 0 AT2G39130 551 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10039190 [exp] 431 / 2e-147 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 305 / 6e-97 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10003817 [exp] 259 / 4e-80 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 264 / 5e-78 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10012824 [exp] 232 / 1e-71 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 228 / 6e-70 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 218 / 5e-65 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10005239 [exp] 209 / 1e-62 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226000 [exp] 535 / 0 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 508 / 1e-177 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 325 / 2e-106 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 252 / 2e-79 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 236 / 1e-73 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 235 / 5e-73 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.017G083700 [exp] 217 / 9e-66 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 215 / 5e-65 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.018G099700 [exp] 176 / 1e-50 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 157 / 6e-43 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10038702 pacid=23143164 polypeptide=Lus10038702 locus=Lus10038702.g ID=Lus10038702.BGIv1.0 annot-version=v1.0 ATGAAGAATTCGGTGTCGGACCAAAGTTTCTACATTGACAGCGACGAAGAAGAATACAGGGACTTCAATCGAGATGAGGAAGGGGAAGATGACGCAGGTA ACCCATCTGATTCCGACGAGTCCATGCCCGATAACCGCAACCAGAGCAAGCCCGGTTCTTACATCACTTCATGGCCCCAAAGTTACAGGCAGTCAATTGA TCTATACAGCAGTGTGCCATCTCCTGGGATTAATTTCCTAAACACACCGTCTCTAACAAGATTAGGAAGCTCGTTCCTAGCTTCTTCACTGGTAAGGAGA CACACGCCGGAATCATTGCCCACAGCAACAGCACCATTGTTGCAGAAAGAAGATGATCAGAAGAAGAGCTCCCATGCACTTCTTCCACCGATCCCACGGC GAAGATCCTCCATCAGGAAAGATGATAAGCCTTCTTCCATGATTGGCCACGAACTCCCCATCTCTCGTCAAAGCTCCTTTGGACAAGCCGTGATCAATGG ATTGAACGTGCTGTGTGGGGTTGGGATACTGTCGACGCCATATGCAGCCAAGGAAGGAGGATGGGCTGGTTTGTCAATTCTGATAATATTTGGTGTCCTC TCTTTCTACACTGGCTTGCTCCTGCGTTACTGCCTCGACAGTGAGCCTGGTCTTGAGACTTACCCTGATATTGGTCATGCTGCTTTTGGTACACCTGGCC GGATTGCCATTTCAATCATATTATACGTGGAGCTCTACGCTTGCTGCGTTGAGTACATCATACTAGAGAGTGACAATTTGTCGTCACTGTTTCCAAATGC ACACTTGAGCTTGTTTGGGATGTACTTGGATGCCCACCACTTTTTTGCTTTTGTGACGACTCTTGCTGTTCTCCCTACAGTCTGGCTCACAGACCTCCGC GTTCTAAGCTACATCTCAGCTGGTGGAGTCATTGCTTCAGTACTAGTAGTGCTATGCCTGTTCTGGGCTGGACTAGTTGATCAAGTCGGCATCCACAGCA AAGGCACCGTTATTAACCTCGGATCTCTCCCTGTGGCACTTGGTCTCTATGGCTATTGTTACTCCGGGCATGCCGTGTTCCCTAACATCTACACTTCCAT GGCTAGGCCTAACCAATACCCTCTTGTTCTCTTGGTTTGGACTGGTGATGTCACTGATAGGATCCTTGCTCACAATGTTTGTGACGTTGATACTTCCTTG TGCTTGCTTTTTGAGCATCCTGAGGAACAAAGTGAAGCCATATCAGGGTTAGTGTCGTCAGCTTTTGGGACTTACTCTGCATTGTCCAAAATCGTGGCAA ATTTGAGCGACTAG
AA sequence Show only first row Show all	>Lus10038702 pacid=23143164 polypeptide=Lus10038702 locus=Lus10038702.g ID=Lus10038702.BGIv1.0 annot-version=v1.0 MKNSVSDQSFYIDSDEEEYRDFNRDEEGEDDAGNPSDSDESMPDNRNQSKPGSYITSWPQSYRQSIDLYSSVPSPGINFLNTPSLTRLGSSFLASSLVRR HTPESLPTATAPLLQKEDDQKKSSHALLPPIPRRRSSIRKDDKPSSMIGHELPISRQSSFGQAVINGLNVLCGVGILSTPYAAKEGGWAGLSILIIFGVL SFYTGLLLRYCLDSEPGLETYPDIGHAAFGTPGRIAISIILYVELYACCVEYIILESDNLSSLFPNAHLSLFGMYLDAHHFFAFVTTLAVLPTVWLTDLR VLSYISAGGVIASVLVVLCLFWAGLVDQVGIHSKGTVINLGSLPVALGLYGYCYSGHAVFPNIYTSMARPNQYPLVLLVWTGDVTDRILAHNVCDVDTSL CLLFEHPEEQSEAISGLVSSAFGTYSALSKIVANLSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39130			Transmembrane amino acid trans...		Lus10038702 [exp]	0	1
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	3.9	0.9076
AT3G25600			Calcium-binding EF-hand family...		Lus10017900 [exp]	6.2	0.9080
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Lus10017285 [exp]	11.4	0.9160
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	18.0	0.9069
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	19.9	0.8885
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	21.1	0.8311
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10027207 [exp]	29.4	0.8183
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	31.3	0.8936
					Lus10024615 [exp]	35.1	0.8963
AT3G21710			unknown protein		Lus10027176 [exp]	35.3	0.8932

Compare expression of checked genes

Lus10038702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.