Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01060 311 / 9e-107 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 149 / 5e-42 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G06800 146 / 2e-41 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04450 146 / 4e-41 GARP Homeodomain-like superfamily protein (.1.2) AT3G24120 140 / 1e-39 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 141 / 2e-39 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT4G13640 138 / 5e-39 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT1G79430 136 / 8e-38 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G13040 137 / 3e-37 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 130 / 5e-35 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039124 [exp] 494 / 7e-179 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10005036 [exp] 156 / 1e-46 AT2G01060 175 / 4e-54 myb-like HTH transcriptional regulator family protein (.1.2) Lus10004809 [exp] 156 / 2e-46 AT2G01060 171 / 5e-52 myb-like HTH transcriptional regulator family protein (.1.2) Lus10027806 [exp] 155 / 2e-46 AT2G01060 172 / 6e-53 myb-like HTH transcriptional regulator family protein (.1.2) Lus10002483 [exp] 152 / 9e-45 AT2G01060 168 / 6e-51 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024938 [exp] 148 / 3e-41 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 146 / 1e-40 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10008197 [exp] 145 / 3e-40 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10016676 [exp] 138 / 7e-39 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000800 [exp] 363 / 2e-126 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 352 / 3e-122 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G101000 [exp] 159 / 3e-47 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G117000 [exp] 157 / 4e-47 AT2G01060 173 / 4e-53 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 150 / 2e-42 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G314800 [exp] 147 / 3e-42 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.007G003200 [exp] 149 / 1e-41 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 148 / 1e-41 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.017G054800 [exp] 145 / 2e-41 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.016G047900 [exp] 144 / 2e-40 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038734 pacid=23150608 polypeptide=Lus10038734 locus=Lus10038734.g ID=Lus10038734.BGIv1.0 annot-version=v1.0 ATGGACCCTGGCAATCACATGGACAACAGCCTTGCCTCCAAGCAGCGATTGCGTTGGACTCATGAACTTCATGAACGTTTTGTGGATTCTGTTGCACAAC TTGGTGGGCCAGATAGAGCTACTCCAAAAGGTGTCCTCAGGGTCATGGGTGTACAAGGCTTAACTATATATCATGTCAAAAGTCATTTACAGAAATATCG ACTTGCCAAGTACCTTCCAGACTCCTCCTCTGATGGCAACAAAACTGACAAGAAAGAAACAGGGGAAATGGTTTCCAATTTAGATGGCTCATCTGGAATG CAAATCACAGAAGCTCTCAAGCTCCAAATGGAGGTGCAGCGACAGTTACAGCTCCGCATCGAAGCGCAGGGGAAATACTTGAAGAAGATAATAGAAGAGC AGCAGCGACTTAGTGGCGTGCTCTCAGAAGGGCCCGGTTCTGGGGTTCCACCGGGGTCAGCAGACCTGGAATCTGACAAGACCGATCCGGCAACTCCCGT CCCAACGACGGAGACACCCCTTCAGGACAAGGCCGCAAAGGAACGTGCCATGAACAAGAGCCTTTCGATTGACGAAACTTTGCATCAGCACCACCACCCA GAGCCAATGACTCCGGATTCGCAAGGTGATATGGTGGGTTCACCAGATGACAGTCCTACAGCCGAGAGGTCGTTGAAGAAGCAGCGTCTAAGCATGGGAA CACAACAATATGGCAAGCAGGACCTCCTTGCGCAGCACCGGATACTGGAGTCGAGCTTAAACTCGTACGCTCAGTCCCATGCTCACGCTGGCTTTGCGGC GGGTAGAGAGCCGTTCGATCATCCTTCGTCAGGTCTATGA
AA sequence Show only first row Show all	>Lus10038734 pacid=23150608 polypeptide=Lus10038734 locus=Lus10038734.g ID=Lus10038734.BGIv1.0 annot-version=v1.0 MDPGNHMDNSLASKQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGNKTDKKETGEMVSNLDGSSGM QITEALKLQMEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEGPGSGVPPGSADLESDKTDPATPVPTTETPLQDKAAKERAMNKSLSIDETLHQHHHP EPMTPDSQGDMVGSPDDSPTAERSLKKQRLSMGTQQYGKQDLLAQHRILESSLNSYAQSHAHAGFAAGREPFDHPSSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	0	1
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026909 [exp]	5.7	0.8356
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	6.3	0.8152
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10015741 [exp]	6.3	0.8237
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10033591 [exp]	6.5	0.7960
AT5G38060			unknown protein		Lus10004070 [exp]	7.1	0.8293
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	7.3	0.8262
AT3G09550			Ankyrin repeat family protein ...		Lus10015037 [exp]	7.7	0.8105
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10024188 [exp]	8.8	0.8108
AT3G51650			unknown protein		Lus10009100 [exp]	10.7	0.7974
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	15.5	0.7780

Compare expression of checked genes

Lus10038734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.