Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 172 / 1e-52 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 170 / 5e-52 GARP Homeodomain-like superfamily protein (.1.2) AT1G69580 144 / 2e-41 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 143 / 6e-41 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT2G01060 137 / 3e-39 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G04030 139 / 4e-39 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 135 / 1e-37 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT5G45580 132 / 2e-37 GARP Homeodomain-like superfamily protein (.1) AT3G12730 129 / 8e-37 GARP Homeodomain-like superfamily protein (.1) AT2G20400 114 / 1e-29 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039123 [exp] 421 / 3e-151 AT3G24120 173 / 5e-53 Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 179 / 8e-55 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 177 / 3e-54 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 152 / 2e-43 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 148 / 8e-42 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 140 / 3e-40 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 139 / 7e-40 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 140 / 2e-39 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 140 / 3e-39 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001200 [exp] 241 / 2e-79 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 183 / 1e-56 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 178 / 8e-55 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 143 / 5e-41 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 140 / 2e-39 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.010G174100 [exp] 138 / 7e-39 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 136 / 7e-39 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.011G023600 [exp] 135 / 1e-38 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.003G100100 [exp] 135 / 2e-38 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1) Potri.008G087600 [exp] 135 / 3e-38 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038735 pacid=23150340 polypeptide=Lus10038735 locus=Lus10038735.g ID=Lus10038735.BGIv1.0 annot-version=v1.0 ATGCAAAATCCCGTCGGCCACTACGGTCGACGGCTGGGCTACGGAGGTGGAGTAGGAGGAGGAGGAGAGTATCCAGGAGAAGTTGTGCTGACTTCCGATC CGAAACCTCGCCTCCGTTGGACTGCTGATCTTCACGACCGATTCGTCGACGCCGTCACTCAGCTGGGTGGCCCCAATAAAGCGACGCCGAAGGGGATTTT GAGGACGATGAATGTGAAAGGACTTACTCTCTTCCACCTAAAGAGTCATCTCCAGAAATACAGGATGGGTAAGCAATTGGTAGGGAAGGATCATATGGGT GGTGATTCCACCAAGGATGATGATGGACTTGCCGAGCTTCCTCGAGCTTCACCAGACACCGCAGCCTCCGATGATGTCAACGAGGGATACCAAGTGAAGG AAGCGCTGAGGGCTCAAATGGAAGTGCAGAGTAAACTACACCTTCAAGTTGTGGCTGAGAAGCACTTGCGAATTCGTCAGGAAGCGGAGCGTAGGTACTT GGCGATGCTTGATCAAGCTTGTAAGCTTCTGGCTAATCAGTTCATCACCGAGTCGATGAGTCTGAACACAAACACGAATTTCTCCTCCGTCAACCATCCT GCCGCCATTGGCAGTAGTATTCAACACCAGGGGACTGATTGCTCCACGGAGAGCTGCTTGACTTCTTCGCACGGGACAGAATCAGCGAGAATCTCCTGCT GGAGGGAAGACAGACAATGA
AA sequence Show only first row Show all	>Lus10038735 pacid=23150340 polypeptide=Lus10038735 locus=Lus10038735.g ID=Lus10038735.BGIv1.0 annot-version=v1.0 MQNPVGHYGRRLGYGGGVGGGGEYPGEVVLTSDPKPRLRWTADLHDRFVDAVTQLGGPNKATPKGILRTMNVKGLTLFHLKSHLQKYRMGKQLVGKDHMG GDSTKDDDGLAELPRASPDTAASDDVNEGYQVKEALRAQMEVQSKLHLQVVAEKHLRIRQEAERRYLAMLDQACKLLANQFITESMSLNTNTNFSSVNHP AAIGSSIQHQGTDCSTESCLTSSHGTESARISCWREDRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10038735 [exp]	0	1
					Lus10009514 [exp]	2.4	0.9248
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10000144 [exp]	3.0	0.9480
AT5G66170		STR18	sulfurtransferase 18 (.1.2.3)		Lus10041894 [exp]	5.7	0.9135
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029626 [exp]	7.7	0.9234
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	12.0	0.9361
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	14.8	0.9243
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	16.9	0.9074
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10037292 [exp]	17.0	0.9026
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	18.4	0.9008
AT2G26230			uricase / urate oxidase / nodu...		Lus10008952 [exp]	21.2	0.9089

Compare expression of checked genes

Lus10038735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.