Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53170 1015 / 0 FTSH11 FTSH protease 11 (.1) AT2G26140 563 / 0 FTSH4 FTSH protease 4 (.1) AT5G15250 410 / 4e-133 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 399 / 8e-129 FTSH8 FTSH protease 8 (.1) AT2G30950 397 / 3e-128 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G50250 390 / 4e-125 FTSH1 FTSH protease 1 (.1) AT5G42270 384 / 6e-123 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G07510 349 / 1e-108 FTSH10 FTSH protease 10 (.1) AT2G29080 349 / 2e-108 FTSH3 FTSH protease 3 (.1) AT3G47060 327 / 5e-100 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014930 [exp] 1353 / 0 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 1012 / 0 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 1008 / 0 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10012277 [exp] 392 / 4e-129 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10001054 [exp] 396 / 7e-128 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 396 / 1e-126 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10021824 [exp] 394 / 1e-126 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 392 / 4e-126 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001573 [exp] 361 / 5e-113 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020700 [exp] 1038 / 0 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 1016 / 0 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 555 / 0 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.002G215100 [exp] 404 / 1e-130 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 400 / 4e-129 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 396 / 1e-127 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 394 / 4e-127 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G012000 [exp] 393 / 2e-126 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.016G099800 [exp] 353 / 5e-110 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.009G033600 [exp] 350 / 6e-109 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10038819 pacid=23150392 polypeptide=Lus10038819 locus=Lus10038819.g ID=Lus10038819.BGIv1.0 annot-version=v1.0 ATGGCGGTTGCTCTCCAAGCTTCTCTTCTCTGCAGACCTTACCCATCTCTTAAGCAACCTTTCCCATATTCCCCTCCTTCTCTAATCCCACGTCGCCACC GCAATTCCTCCTCCCTCGTCGTCCTTTCTCGCCGCTCTTATCCTTCCTTATTCTGCACATTGAATCCAGATAAACCCCTCTCCGAAGCTGAATTCAAGGA TGAGAAGTTGGAGGAGGAGAAGATGAATAAGATCAAGTATCCGGCGGTGATGTTTCTGATAGGGATTTGGGCTGCTTTACGGAGACGAGTTGATCGCTTA CTGGAATCGGCTTGGTTCAGCTGGTTTCCCGGTTGGCGGAAAGGGATGCGGCTCAAACGACTCGCTGCAGAAGCTGATGCCAATCCTAAGGATCCGGTGA AGCAGACTGAGCTCTTGGCTGAGCTCAACAAGCACGATCCTGAGTCAGTGATCAAGAGGTTTGAACAGAGAGAGCTTGCAGTGGACAGTAGGGGAGTTGC TGAGTATCTGAGAGCTATTGTGGCTACTAATGCTATTGCAGATTTCCTTCCTGATGAAAAGTCTGGGAAGCCTGCCAGTCTTCCTGAATTGTTGGAAGAA CTAAAACAGCGGGCAGCTGAGAACACGAGCGAGCCTTCTCGTAACCCTGGCATTTCCGAGAAGCAACCGTTGCATGTAGTGATGGTTGATCCTAGAGTTC GACCAAGGTCGTGGTTGGCTCACGAGCTTGTCTCCACAATTGTGCTCACTATTACCGTTGGAATATTCTGGTATATGGGTAACTCTGCACTCCAGAAATA TACAGGGAACCTGGGAGGAATAGGGGCTTCAGGAATTGGCTCGAGTTCAACGTTATCACCAAAGGACGTTAACAAAGAAGTCATGCCTGATAAAAATGTT AAAACATTCAAGGATGTCAAAGGTTGTGATGATGCCAAACAAGAGCTTGAGGAAGTGGTCGAATACCTCAAGAACCCTTCCAAATTTACCAGGCTTGGTG GGAAGTTGCCAAAGGGAATTCTCTTGACTGGAGCACCAGGCACTGGAAAAACTTTGCTGGCTAAGGCTATTGCTGGAGAAGCTGGCGTACCTTTCTTTTA CAGAGCTGGTTCCGAGTTCGAGGAAATGTTTGTTGGTGTCGGTGCCAAGCGTGTAAGATCGTTGTTCCAAGCAGCTAAGAAGAAGGCTCCTTGCATTATT TTTATCGATGAGATCGATGCTGTTGGCTCGACGCGTAAACAATGGGAAGGCCACACGAAGAAGACTTTACATCAGTTGCTTGTTGAGATGGATGGCTTCG AACAGAACGAGGGAATAATATTAATGGCTGCAACCAACTTGCCGGATATTCTTGATCCAGCTTTGACAAGGCCTGGTAGATTTGATAGACACATCGTGGT TCCAAATCCAGATGTACGTGGACGTCAAGAGATTCTCGAGCTCTACTTGAAAGACAAACCTATGGCGGATGACGTGGACCCTAACGCGATTGCTCGAGGC ACACCAGGTTTTAACGGAGCAGATCTCGCAAACCTGGTGAATATAGCTGCCATTAAAGCTGCAGTGGATGGAGCGGAGAAACTAACTTCGGTACAGTTGG AGTTTGCAAAAGACCGGATATTCATGGGAACTGAGCGGAAGACAATGTTCATATCAGAAGACTCCAAGAAGTTGACTGCATATCACGAGAGCGGACATGC CATCGTAGCTTTGAACACCGAGGGAGCACATCCGATCCACAAGGCCACCATAATGCCTCGTGGATCGGCTCTAGGAATGGTCACCCAGCTTCCCTCAGAC GACGAAACCTCGATCAGCAAAAAGCAGTTACTAGCCCGGCTAGACGTTTGCATGGGAGGAAGAGTTGCTGAAGAGCTCATCTTTGGGAAGGACAATGTCA CAACAGGAGCGAGTAGCGACCTCAGCCAAGCTACAGATCTAGCACAGTACATGGTATCTAGTTGTGGAATGAGCGACGAAATCGGACTGGTCCGGATAAA GGATCGAGCCAGTTCGAGAATGCAATCTCAGGTTGATGCAGAAGTTGGGAAGCTCCTAAGGGAAGCTTACGAACGCGTGAAGGTCCTACTGAAGAAGCAT GAGAAGGCGTTACATGCGCTGGCAAACGCTCTTCTGGAGTACGAAACACTCACATCAGAAGAGATCAAGCGGATCCTGAAGCCTTTTCGTCATGAAGGCC AGCTTCCGGAGCCGCAGCAACAAGAAGTGAAAGAACAAGGTGATCTTGTTCTGGCATAG
AA sequence Show only first row Show all	>Lus10038819 pacid=23150392 polypeptide=Lus10038819 locus=Lus10038819.g ID=Lus10038819.BGIv1.0 annot-version=v1.0 MAVALQASLLCRPYPSLKQPFPYSPPSLIPRRHRNSSSLVVLSRRSYPSLFCTLNPDKPLSEAEFKDEKLEEEKMNKIKYPAVMFLIGIWAALRRRVDRL LESAWFSWFPGWRKGMRLKRLAAEADANPKDPVKQTELLAELNKHDPESVIKRFEQRELAVDSRGVAEYLRAIVATNAIADFLPDEKSGKPASLPELLEE LKQRAAENTSEPSRNPGISEKQPLHVVMVDPRVRPRSWLAHELVSTIVLTITVGIFWYMGNSALQKYTGNLGGIGASGIGSSSTLSPKDVNKEVMPDKNV KTFKDVKGCDDAKQELEEVVEYLKNPSKFTRLGGKLPKGILLTGAPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMFVGVGAKRVRSLFQAAKKKAPCII FIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLKDKPMADDVDPNAIARG TPGFNGADLANLVNIAAIKAAVDGAEKLTSVQLEFAKDRIFMGTERKTMFISEDSKKLTAYHESGHAIVALNTEGAHPIHKATIMPRGSALGMVTQLPSD DETSISKKQLLARLDVCMGGRVAEELIFGKDNVTTGASSDLSQATDLAQYMVSSCGMSDEIGLVRIKDRASSRMQSQVDAEVGKLLREAYERVKVLLKKH EKALHALANALLEYETLTSEEIKRILKPFRHEGQLPEPQQQEVKEQGDLVLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10038819 [exp]	0	1
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10014930 [exp]	1.0	0.9396
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	4.0	0.8694
AT2G21710		EMB2219	embryo defective 2219, Mitocho...		Lus10042322 [exp]	5.5	0.8607
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	5.7	0.8566
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	8.4	0.8400
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	9.2	0.8173
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	9.4	0.8335
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Lus10020930 [exp]	9.4	0.8250
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10001656 [exp]	10.4	0.8184
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10024729 [exp]	10.7	0.8456

Compare expression of checked genes

Lus10038819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.