Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01380 83 / 2e-22 MYB ETC1 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) AT5G53200 81 / 1e-21 MYB TRY TRIPTYCHON, Homeodomain-like superfamily protein (.1) AT2G46410 79 / 8e-21 MYB CPC CAPRICE, Homeodomain-like superfamily protein (.1) AT2G30432 75 / 2e-19 MYB TCL1 TRICHOMELESS1, Homeodomain-like superfamily protein (.1) AT2G30424 75 / 3e-19 MYB TCL2 TRICHOMELESS 2, Homeodomain-like superfamily protein (.1) AT2G30420 75 / 3e-19 MYB ETC2 ENHANCER OF TRY AND CPC 2, Homeodomain-like superfamily protein (.1) AT4G01060 73 / 9e-19 MYB CPL3, ETC3 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) AT5G52600 59 / 5e-12 MYB AtMYB82 myb domain protein 82 (.1) AT3G13540 59 / 8e-12 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT5G40330 58 / 1e-11 MYB ATMYBRTF, ATMYB23 myb domain protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014933 [exp] 113 / 2e-34 AT2G46410 96 / 1e-27 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10005949 [exp] 71 / 9e-18 AT4G01060 91 / 2e-25 ENHANCER OF TRY AND CPC 3, CAPRICE-like MYB3 (.1.2.3) Lus10018414 [exp] 66 / 6e-14 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10007643 [exp] 61 / 1e-13 AT2G46410 65 / 3e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10018366 [exp] 61 / 2e-13 AT2G46410 67 / 2e-15 CAPRICE, Homeodomain-like superfamily protein (.1) Lus10006647 [exp] 61 / 1e-12 AT5G52600 186 / 6e-59 myb domain protein 82 (.1) Lus10038092 [exp] 60 / 3e-12 AT5G52600 185 / 1e-58 myb domain protein 82 (.1) Lus10039173 [exp] 60 / 6e-12 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10033438 [exp] 58 / 3e-11 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031200 [exp] 88 / 1e-23 AT5G53200 102 / 6e-29 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.015G022000 [exp] 84 / 1e-22 AT5G53200 104 / 2e-30 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.002G168900 [exp] 81 / 3e-21 AT5G53200 122 / 2e-37 TRIPTYCHON, Homeodomain-like superfamily protein (.1) Potri.014G096300 [exp] 78 / 2e-20 AT2G46410 114 / 1e-34 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.004G015100 [exp] 68 / 8e-17 AT2G46410 71 / 1e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.007G122800 [exp] 66 / 1e-15 AT2G46410 69 / 3e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.017G037000 [exp] 65 / 2e-15 AT2G46410 69 / 4e-17 CAPRICE, Homeodomain-like superfamily protein (.1) Potri.011G026300 [exp] 64 / 4e-15 AT1G01380 68 / 9e-17 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.004G021300 [exp] 64 / 4e-15 AT1G01380 67 / 1e-16 ENHANCER OF TRY AND CPC 1, Homeodomain-like superfamily protein (.1) Potri.001G005100 [exp] 61 / 2e-12 AT3G13540 247 / 1e-81 myb domain protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038822 pacid=23150360 polypeptide=Lus10038822 locus=Lus10038822.g ID=Lus10038822.BGIv1.0 annot-version=v1.0 ATGGGGAGTTGGTCTAAAGCAGATGATAAAGACAGTATCAGCAGCAGCTCTGTTTCTCAAGAGGTGAGCAGCCGAGAATGGGAAGTGGTGAGGATGACTG AGCAGGAAGAAGACCTCATCTTCAGAATGTACAGGCTAGTTGGGAAGAGGTGGGATTTGATCGCTGGACGGATTCCTGGCCGATCGGCTGAGGAAATCGA GCGATTTTGGATCATGAAACACCATGGAAAGACCAATGTGGATGATCATGCACTATGA
AA sequence Show only first row Show all	>Lus10038822 pacid=23150360 polypeptide=Lus10038822 locus=Lus10038822.g ID=Lus10038822.BGIv1.0 annot-version=v1.0 MGSWSKADDKDSISSSSVSQEVSSREWEVVRMTEQEEDLIFRMYRLVGKRWDLIAGRIPGRSAEEIERFWIMKHHGKTNVDDHAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53200	MYB	TRY	TRIPTYCHON, Homeodomain-like s...		Lus10038822 [exp]	0	1
AT4G28040			nodulin MtN21 /EamA-like trans...		Lus10019969 [exp]	3.0	0.8216
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10005325 [exp]	4.2	0.7752
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10042224 [exp]	8.1	0.8085
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Lus10007856 [exp]	8.9	0.7602
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	22.4	0.7677
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Lus10014933 [exp]	23.7	0.7061
AT3G61660			unknown protein		Lus10032366 [exp]	23.9	0.6645
AT5G62550			unknown protein		Lus10024245 [exp]	26.2	0.7321
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	26.6	0.7479
AT5G62550			unknown protein		Lus10023614 [exp]	31.0	0.7365

Compare expression of checked genes

Lus10038822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.