Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52660 241 / 1e-76 MYB Homeodomain-like superfamily protein (.1.2) AT4G25740 200 / 7e-63 RNA binding Plectin/S10 domain-containing protein (.1.2) AT4G01280 196 / 1e-59 MYB Homeodomain-like superfamily protein (.1.2) AT1G01520 189 / 8e-57 MYB ASG4 ALTERED SEED GERMINATION 4, Homeodomain-like superfamily protein (.1) AT5G52650 183 / 4e-56 RNA binding Plectin/S10 domain-containing protein (.1) AT3G09600 184 / 3e-55 MYB LCL5 (LHY-CCA1-LIKE5), REVEILLE 8 (RVE8) REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) AT5G41520 181 / 3e-55 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G02840 178 / 8e-53 MYB LCL1 LHY/CCA1-like 1 (.1.2.3) AT5G17300 102 / 6e-24 MYB RVE1 REVEILLE 1, Homeodomain-like superfamily protein (.1) AT5G37260 98 / 6e-23 MYB RVE2, CIR1 REVEILLE 2, CIRCADIAN 1, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027521 [exp] 326 / 5e-110 AT5G52660 353 / 1e-122 Homeodomain-like superfamily protein (.1.2) Lus10014966 [exp] 316 / 1e-106 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10039284 [exp] 316 / 8e-105 AT5G52660 350 / 9e-120 Homeodomain-like superfamily protein (.1.2) Lus10007914 [exp] 216 / 2e-66 AT5G52660 301 / 8e-101 Homeodomain-like superfamily protein (.1.2) Lus10036392 [exp] 209 / 6e-64 AT5G52660 306 / 5e-103 Homeodomain-like superfamily protein (.1.2) Lus10039282 [exp] 199 / 4e-62 AT4G25740 236 / 1e-80 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10032298 [exp] 204 / 2e-60 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10024669 [exp] 204 / 2e-60 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10019902 [exp] 180 / 2e-52 AT3G09600 351 / 9e-121 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073300 [exp] 278 / 2e-91 AT5G52660 298 / 2e-100 Homeodomain-like superfamily protein (.1.2) Potri.017G146800 [exp] 277 / 8e-91 AT5G52660 303 / 3e-102 Homeodomain-like superfamily protein (.1.2) Potri.002G163100 [exp] 235 / 9e-74 AT4G01280 266 / 1e-87 Homeodomain-like superfamily protein (.1.2) Potri.014G089300 [exp] 234 / 2e-73 AT4G01280 293 / 2e-98 Homeodomain-like superfamily protein (.1.2) Potri.017G146700 [exp] 201 / 6e-63 AT4G25740 180 / 1e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.005G040100 [exp] 199 / 3e-62 AT4G25740 177 / 2e-57 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.013G027900 [exp] 188 / 5e-58 AT5G52650 179 / 8e-58 RNA binding Plectin/S10 domain-containing protein (.1) Potri.004G073500 [exp] 188 / 5e-58 AT4G25740 178 / 6e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.006G133000 [exp] 190 / 8e-57 AT3G09600 379 / 1e-132 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2) Potri.016G083900 [exp] 179 / 2e-52 AT3G09600 375 / 4e-131 REVEILLE 8, LHY-CCA1-LIKE5, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [flax] [poplar] HTH PF03501 [flax] [poplar] S10_plectin Plectin/S10 domain
Representative CDS sequence Show only first row Show all	>Lus10038846 pacid=23150651 polypeptide=Lus10038846 locus=Lus10038846.g ID=Lus10038846.BGIv1.0 annot-version=v1.0 ATGGTGTCGAACAACCCGAACCCGACTGAAGGATTCTACCTGGATCCTAACGGAATGGCGCTCCCTGGACTCGGACCTTTCGCCACCTCGCCGACGGCGG CTGCGGCGGCTTCGAATTCCTCCGCCGATGATCTGAGCAAGAAGATCAGGAAGCCGTACACCATCACCAAGTCGAGGGAGAGCTGGACCGAGCCTGAGCA CGATAAGTTCCTCGAAGCTCTCCAGCTCTTTGACCGAGATTGGAAGAAGATTGAAGCGTTTATTGGATCCAAGACTGTAATTCAGATACGCAGTCATGCA CAGAAGTACTTCCTCAAGGTTCAGAAAAGTGGAACTGGTGAACATCTGCCGCCTCCAAGGCCTAAAAGGAAAGCTGCTCATCCATATCCTCAAAAGGCTT CAAAAAGTGCTGTTGCTGCAGTGCTTCCACAATCTTCAGGGTCTATTCAGTCGCCATCTGCTCTTCTTGAAGCCACTGTACCGCCCGACTCCCCTTCAAT GCCGGTGAACCCAGTCATAAGTGCTCCTGTCAGTTTGTCAAATCAGGGAAAAGTTCCATCACTGTCGAATAATTCATGTAGCAGCACAGAGAGTACTCCG AAAACTAAACAAACTGGTGAAATGGCAGAACAAGGAAATATGTTCAGAGGCAGTGTCTTCGATCCAGATGCCACTGACCATCTGCCAAAGCTCAAGAAAA TGGATCCCATAGACGTCGAAACGGTGCTGTTGTTGATGCGAAACCTCTCCATTAATTTAACCAGTCCTGACTTCGAGGATCATATTATTTCCGAAAAGAA CCGGAGAGAAATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCGAAGAAGGATTTCAACCTAGCGAAGCACCCGGACATCGATGTCCCGAATCTC CAGGTGATTAAGCTGATGCAGAGCTTCAAATCTAAGGAGTACGTCTGCGAGACGTTTGCCTGGATGCACTACTACTGGTATCTGACCAACGAAGGGATCG AGTTCTTGAGAACTTACCTCAACTTGCCGTCTGAGATTGTGCCTGCTACGTTGAAGAAGTCCGCCAAGCCTATGGGAGGTCCGCAAGGCGACCGTCCAAG GGGACCTCCTCGTTCCGATGGAGACCGTCCGAGATTTGGTGATCGTGATGGCTACCGTAGCGGACCTCGTGGTGGAGGTGACTTTGGCAGCGAGAAGGGC GGTGCTCCGGCCGAGTTCCAGCCTTCGTTCAGGGTAATTTCTTTTTTTGTGTCGAATGGACCTTTGGGTTAA
AA sequence Show only first row Show all	>Lus10038846 pacid=23150651 polypeptide=Lus10038846 locus=Lus10038846.g ID=Lus10038846.BGIv1.0 annot-version=v1.0 MVSNNPNPTEGFYLDPNGMALPGLGPFATSPTAAAAASNSSADDLSKKIRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA QKYFLKVQKSGTGEHLPPPRPKRKAAHPYPQKASKSAVAAVLPQSSGSIQSPSALLEATVPPDSPSMPVNPVISAPVSLSNQGKVPSLSNNSCSSTESTP KTKQTGEMAEQGNMFRGSVFDPDATDHLPKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHIISEKNRREISKYLFQEGVCYAKKDFNLAKHPDIDVPNL QVIKLMQSFKSKEYVCETFAWMHYYWYLTNEGIEFLRTYLNLPSEIVPATLKKSAKPMGGPQGDRPRGPPRSDGDRPRFGDRDGYRSGPRGGGDFGSEKG GAPAEFQPSFRVISFFVSNGPLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10038846 [exp]	0	1
AT5G24510			60S acidic ribosomal protein f...		Lus10008944 [exp]	1.7	0.8418
AT4G25740			RNA binding Plectin/S10 domain...		Lus10014966 [exp]	2.0	0.8261
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10021844 [exp]	2.8	0.8389
AT1G17880		ATBTF3	basic transcription factor 3 (...		Lus10031551 [exp]	6.9	0.8350
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	11.6	0.8182
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	13.6	0.8063
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	13.9	0.7894
AT3G16780			Ribosomal protein L19e family ...		Lus10023388 [exp]	16.7	0.7734
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	16.9	0.7989
AT4G35850			Pentatricopeptide repeat (PPR)...		Lus10003653 [exp]	17.2	0.7168

Compare expression of checked genes

Lus10038846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.