Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23430 411 / 2e-144 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 410 / 3e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 390 / 2e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 331 / 5e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 327 / 4e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 246 / 1e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 244 / 9e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 220 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 112 / 8e-28 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 108 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014975 [exp] 658 / 0 AT4G23430 442 / 8e-157 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032282 [exp] 417 / 5e-147 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 416 / 1e-146 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 416 / 1e-146 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 410 / 4e-144 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10031101 [exp] 408 / 3e-143 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10028781 [exp] 398 / 3e-139 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 395 / 4e-138 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 392 / 3e-137 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 431 / 1e-152 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 421 / 1e-148 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 419 / 6e-147 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 416 / 3e-146 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 392 / 3e-137 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 387 / 4e-135 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G083900 [exp] 344 / 5e-118 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 232 / 5e-74 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 232 / 5e-74 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 226 / 8e-72 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10038857 pacid=23150274 polypeptide=Lus10038857 locus=Lus10038857.g ID=Lus10038857.BGIv1.0 annot-version=v1.0 ATGTGGCTGTTTAAGAAGAACGGCCCATCTGGGTTCTCTTCCTCTTCCACCGCCGAGGAAGGCACTGCCGGGCTTGCACCCTCTTCTCTCACCGCCACTG TTCCGCTGTTTAAGAAGAACGGCCCATCTGGGTTCTCTTCCTCTTCCACCGCCGAGGAAGTCACTGCCGGGATTGACGCCTCTTCTCTCACCGCCATTGT TACAGGAGCATCCAGTGGGATTGGTGCTGAAACAGCCCGGGTCCTTGCACTTCGAGGAGTCAGCGTGATCATGGCGGTCCGGAATATGGACTCGGCTAAA AGAGTGAAGGAAGAAATAGTAAAACAAGTCCCTTCTGCTAAGATTGACGCCATGGAATTGGACCTCAGCTCATTGGCCTCTGTAAGGAAATTCGCTTCGG CTTTCAACTCCTCTGGCCGTCGCCTCAATCTCTTAATTAACAATGCAGGTGTAATGGCGACTCCTTTCACTCTTTGTAAGGACAACATTGAGCTGCAGTT TGCAACAAATCATTTGGGTCATTTTCTCCTGACCAGTCTGTTACTGGAAAACATGAAGAAGACCGCAGTCGAAAGCAAGAAGGAAGGAAGAATCGTAGTG GTTGCATCGGAAGCTCACCGGGCTACTTACCCTAACGGCATTCGTTTCAACAAGATCAACGACAAAACAGGATATTCTTCTTACCTTGCATACGGGCAAT CGAAGCTCTCGAATATCTTGCACGCAAACGAACTCTCCAGACGCCTAAAGGAGGAAGGTGCGAATGTAACAGCGAATTCTCTTCACCCGGGCATAATCGC CACCAACCTTTTCCGGCACATGACCATCGTTTCTGGCATTGTAGATGCATTCGGGAAGCTGGCATTCAAGAACGTTCAACAGGGTGCGGCTACAACTTGC TATCTGGCATTGCATCCACAGGTGAAGGGGATAAGTGGTGAGTACTTCTCAGACAGTAATCTGGCAAAGCCAACCTCTTTGGGGAAAGATGATGCCTTGG GGAAGAAGCTTTGGGACTTCAGCTCAGATTTGGTCAAGTAA
AA sequence Show only first row Show all	>Lus10038857 pacid=23150274 polypeptide=Lus10038857 locus=Lus10038857.g ID=Lus10038857.BGIv1.0 annot-version=v1.0 MWLFKKNGPSGFSSSSTAEEGTAGLAPSSLTATVPLFKKNGPSGFSSSSTAEEVTAGIDASSLTAIVTGASSGIGAETARVLALRGVSVIMAVRNMDSAK RVKEEIVKQVPSAKIDAMELDLSSLASVRKFASAFNSSGRRLNLLINNAGVMATPFTLCKDNIELQFATNHLGHFLLTSLLLENMKKTAVESKKEGRIVV VASEAHRATYPNGIRFNKINDKTGYSSYLAYGQSKLSNILHANELSRRLKEEGANVTANSLHPGIIATNLFRHMTIVSGIVDAFGKLAFKNVQQGAATTC YLALHPQVKGISGEYFSDSNLAKPTSLGKDDALGKKLWDFSSDLVK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10038857 [exp]	0	1
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10014975 [exp]	1.0	0.9663
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10027461 [exp]	1.7	0.9314
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10039216 [exp]	2.0	0.9423
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Lus10009522 [exp]	2.8	0.9252
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10028425 [exp]	5.7	0.9130
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10041878 [exp]	8.5	0.9111
AT1G11720		ATSS3	starch synthase 3 (.1.2)		Lus10020044 [exp]	9.0	0.8542
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	10.4	0.9043
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10032840 [exp]	11.4	0.9019
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	12.6	0.9180

Compare expression of checked genes

Lus10038857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.