Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66230 246 / 9e-82 MYB ATMYB20 myb domain protein 20 (.1) AT4G22680 241 / 4e-80 MYB ATMYB85 myb domain protein 85 (.1) AT4G12350 241 / 6e-80 MYB ATMYB42 myb domain protein 42 (.1) AT5G16600 236 / 2e-77 MYB ATMYB43 myb domain protein 43 (.1) AT3G02940 212 / 6e-68 MYB ATMYB107 myb domain protein 107 (.1) AT5G62320 209 / 6e-68 MYB ATMYB99, AtMYBCU15 myb domain protein 99 (.1) AT5G14340 209 / 1e-67 MYB AtMYB40 myb domain protein 40 (.1) AT5G15310 209 / 6e-67 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 209 / 9e-67 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G28110 207 / 9e-67 MYB ATMYB41 myb domain protein 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027197 [exp] 407 / 5e-146 AT1G66230 249 / 6e-83 myb domain protein 20 (.1) Lus10032226 [exp] 257 / 1e-85 AT4G12350 295 / 7e-100 myb domain protein 42 (.1) Lus10024589 [exp] 256 / 3e-85 AT4G12350 298 / 6e-101 myb domain protein 42 (.1) Lus10004043 [exp] 248 / 2e-81 AT1G66230 264 / 4e-87 myb domain protein 20 (.1) Lus10002296 [exp] 248 / 2e-81 AT1G66230 263 / 1e-86 myb domain protein 20 (.1) Lus10004042 [exp] 228 / 7e-74 AT1G66230 251 / 2e-81 myb domain protein 20 (.1) Lus10032117 [exp] 214 / 4e-69 AT5G14340 244 / 9e-81 myb domain protein 40 (.1) Lus10014569 [exp] 210 / 9e-68 AT5G14340 239 / 7e-79 myb domain protein 40 (.1) Lus10010974 [exp] 206 / 3e-67 AT5G16600 215 / 8e-70 myb domain protein 43 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G118800 [exp] 254 / 3e-85 AT4G12350 303 / 1e-103 myb domain protein 42 (.1) Potri.015G129100 [exp] 254 / 5e-85 AT4G22680 249 / 1e-82 myb domain protein 85 (.1) Potri.012G127700 [exp] 253 / 1e-84 AT4G22680 256 / 2e-85 myb domain protein 85 (.1) Potri.003G114100 [exp] 250 / 1e-83 AT4G12350 300 / 1e-102 myb domain protein 42 (.1) Potri.004G086300 [exp] 246 / 4e-81 AT5G16600 284 / 7e-95 myb domain protein 43 (.1) Potri.017G130300 [exp] 240 / 5e-79 AT5G16600 280 / 2e-93 myb domain protein 43 (.1) Potri.001G336700 [exp] 219 / 2e-71 AT5G14340 275 / 6e-93 myb domain protein 40 (.1) Potri.002G096800 [exp] 211 / 2e-67 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.007G093900 [exp] 211 / 2e-67 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.005G074500 [exp] 211 / 3e-67 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038913 pacid=23150307 polypeptide=Lus10038913 locus=Lus10038913.g ID=Lus10038913.BGIv1.0 annot-version=v1.0 ATGGGAAGGCAGCCCTGTTGCGACAAGCTAGGAGTGAAGAAGGGACCGTGGACGGCGGAGGAAGACCGCAAGTTGGTCAACTTCATAGTAACCCACGGCC AATGCTGCTGGCGCGCCGTACCCAAGCTCGCTGGACTCTGCCGCTGCGGGAAGAGCTGCCGCCTCCGGTGGACTAACTACCTCCGTCCCGACTTGAAACG CGGCGTTTTGAACGAGTCCGAGGAACGCCTCGTCATCGATCTTCACTCCCGTCTCGGCAATCGATGGTCCAAGATTGCGGCTGAGTTGCCAGGAAGAACA GACAACGAAATCAAGAATCACTGGAACACCCACATCAAGAAGAAGCTGATCAAGATGGGGATCGATCCCGTGACCCACAAGCCTCTTGACGACAAAGTAG AGGAAACTACTGACGACCATGATGTTGATTGTCAAGAGCCACAGAGAGGCAGTTGCATCAGCGACAACGATTCTTTTGACGAATCTCGACAGTTCGATTC CAAACCGATGAGTACTCTTGGTTGGTCATCAGAACTACTCTCGGCCGACGACCACATTGACTCCACGTGGCGACCATGGTCGGACTCCGAGTTCAAGGAG CTTGGATCGGTGGGCGATCATCATCTTGACGATCATCACTTGAGTCTCCTAAATGGGTTCAATTGCTTCGGTGAGATCGACTTGTTATCCGACATGAGTG AACATATTAGGTAG
AA sequence Show only first row Show all	>Lus10038913 pacid=23150307 polypeptide=Lus10038913 locus=Lus10038913.g ID=Lus10038913.BGIv1.0 annot-version=v1.0 MGRQPCCDKLGVKKGPWTAEEDRKLVNFIVTHGQCCWRAVPKLAGLCRCGKSCRLRWTNYLRPDLKRGVLNESEERLVIDLHSRLGNRWSKIAAELPGRT DNEIKNHWNTHIKKKLIKMGIDPVTHKPLDDKVEETTDDHDVDCQEPQRGSCISDNDSFDESRQFDSKPMSTLGWSSELLSADDHIDSTWRPWSDSEFKE LGSVGDHHLDDHHLSLLNGFNCFGEIDLLSDMSEHIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	1.0	0.9820
AT2G39518			Uncharacterised protein family...		Lus10040298 [exp]	2.0	0.9713
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	3.7	0.9618
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	5.8	0.9516
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	6.5	0.9679
AT5G02090			unknown protein		Lus10010878 [exp]	6.5	0.9635
AT1G23390			Kelch repeat-containing F-box ...		Lus10013033 [exp]	8.1	0.9525
					Lus10017305 [exp]	8.7	0.9643
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10032226 [exp]	8.9	0.9672
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Lus10024123 [exp]	10.8	0.9579

Compare expression of checked genes

Lus10038913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.