Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51480 833 / 0 SKS2 SKU5 similar 2 (.1) AT4G25240 822 / 0 SKS1 SKU5 similar 1 (.1) AT4G12420 774 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT5G48450 635 / 0 SKS3 SKU5 similar 3 (.1) AT1G21850 495 / 3e-170 SKS8 SKU5 similar 8 (.1) AT1G21860 493 / 9e-170 SKS7 SKU5 similar 7 (.1) AT4G22010 493 / 1e-169 SKS4 SKU5 similar 4 (.1) AT1G76160 488 / 2e-167 SKS5 SKU5 similar 5 (.1) AT1G55570 483 / 3e-165 SKS12 SKU5 similar 12 (.1) AT1G41830 479 / 4e-164 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027207 [exp] 1078 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10031143 [exp] 924 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 920 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10028921 [exp] 774 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 771 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 761 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 753 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10025860 [exp] 671 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 659 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G126400 [exp] 873 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.015G127200 [exp] 866 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.003G112700 [exp] 788 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.001G120300 [exp] 784 / 0 AT4G12420 930 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.014G177700 [exp] 659 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.002G021000 [exp] 508 / 3e-175 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.002G227600 [exp] 506 / 2e-174 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 503 / 2e-173 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.005G247700 [exp] 501 / 1e-172 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 496 / 1e-170 AT1G76160 902 / 0.0 SKU5 similar 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10038920 pacid=23150500 polypeptide=Lus10038920 locus=Lus10038920.g ID=Lus10038920.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTGCTTCTTCTTCTTCCTCTTCTCCGATTCTTAGTAGTCGGCATTGCTCTGTTTTCGGCGATCCCCTGTAGTTTGGCGGCTGACCCGACCG TCTCTTACGACTTCAAGGTCTCTTACATCACCGCCTCCCCTCTCGGCGTTCCTCAACAGGTGATTGCGGTGAACGGAGAGTTCCCTGGTCCGGTGATCAA CGCCACGACGAACTACAATGTGGTTGTCAACGTCGTCAACCAACTCGACGAGGGGCTCCTCATGACTTGGCAAGGGATTCAATTGCGGAGAAACTCATGG CAAGACGGAGTCCGGGGAACGAACTGCCCGATCCAACCGAAGAGGAACTTCACTTATAATTTCCAAGTCAAGGACCAGATCGGCAGCTTCTTCTACTACC CGTCGCTTCACCTCCAGCGATCCTCCGGAGGGTTCGGTCCGATGGTTGTCAACAACCGGGAAGTGATTGAGATCCCATTCCGGAAGCCTGACGGAGATAT CAACTTGCTCATCGGCGATTGGTATACTCAAAACCACACGGGTTTGAGGGCTTCTCTTGATGCTGGGAAAGAGCTAGGGATGCCCGATGGAGTTCTGATC AATGGGAAAGGACCTTTCAAGTATAACTCAAGTGTTCCTGATGGTATCAAGCACGAGACCATCAATGTCGATCCGGGCAAGACATACAGGCTAAGAGTCC ACAATGTAGGAACTTCAACAACCTTAAACCTTCGAATCCAAGGCCACAACATGATCCTAATCGAGACGGAGGGCCGGTACACGATCCAACAAAACTACAG CAGCTTCGACATCCACGTGGGCCAGTCATACTCGTTCCTAGTCACCATGGATCAAGATGCTACCAGTGATTACTACATTGTCGCGAGTGCTCGATACGTG AACGAGTCGATCTGGCGGAGGGTCACGGGCGTGGCCGTCTTGCACTATTCCAACTCCAAGGGCCCTGCTAGTGGGCCCCTGCCTGATGCTCCCAGTGATA TTTATAACCAGTGGTCTGCCATGAACCAGGCCAAGTCTATCAGGCAGAACACGACTGCAAGTGGAGCAAGGCCAAATCCACAGGGATCATTCCGGTACGG CTCGATCAACACAACCAAAACCTACATCCTGAGAGCTCTACCACCGACAACCGACGGCAAACGACGCGGTTCGACTCTGAATGGGATCTCATTCAAGAAC CCAAATACGCCCATAAGGCTGGCGGACGTTCATAAGGTGAAAGGAGTTTACAAGCTGGATTTCCCAGCTCAGCCGCCCGCCGTCGTCAATGACAGCGGAG GGGCTAAGGTGGAGACCTCTGTTCTGAATGCTACGTACAGAGGGTTTGTGGAGTTGGTGCTGCAGAACAATGATACCAAGTTGCTCAGCTTTCACTTGGA TGGCTACTCCTTGTTTGTTGTCGGGATGGATTGGGGGATCTGGTCGGAGAGCAACAGAGATTCATACAACAAATGGGATGCGATTTCTCGGTCTACTGTT GAGGTTCATCCAGGATCATGGACAGCAGTCTACGCATCACTCGACAACGTTGGAGTGTGGAATCTCCGAGTCGAGAATCTCGACAGATGGTATCTCGGCC TTGAAACCTACATGATGATCATCAACCCGGAGGAAAATGGCGAGACTGAGATGGGTCCACCGGACAATGTCGTCTTCTGTGGTCAGCTTCAGAGCTTGGA GAAGGAAACATCATCAGCTCCAGGTTCAACATCATCAAATGTGCTTGCTAGTTTGGTCGTTGCTGCTGTTTCTGCTCTGTTCTTGATCTCGGTTTGA
AA sequence Show only first row Show all	>Lus10038920 pacid=23150500 polypeptide=Lus10038920 locus=Lus10038920.g ID=Lus10038920.BGIv1.0 annot-version=v1.0 MAALLLLLPLLRFLVVGIALFSAIPCSLAADPTVSYDFKVSYITASPLGVPQQVIAVNGEFPGPVINATTNYNVVVNVVNQLDEGLLMTWQGIQLRRNSW QDGVRGTNCPIQPKRNFTYNFQVKDQIGSFFYYPSLHLQRSSGGFGPMVVNNREVIEIPFRKPDGDINLLIGDWYTQNHTGLRASLDAGKELGMPDGVLI NGKGPFKYNSSVPDGIKHETINVDPGKTYRLRVHNVGTSTTLNLRIQGHNMILIETEGRYTIQQNYSSFDIHVGQSYSFLVTMDQDATSDYYIVASARYV NESIWRRVTGVAVLHYSNSKGPASGPLPDAPSDIYNQWSAMNQAKSIRQNTTASGARPNPQGSFRYGSINTTKTYILRALPPTTDGKRRGSTLNGISFKN PNTPIRLADVHKVKGVYKLDFPAQPPAVVNDSGGAKVETSVLNATYRGFVELVLQNNDTKLLSFHLDGYSLFVVGMDWGIWSESNRDSYNKWDAISRSTV EVHPGSWTAVYASLDNVGVWNLRVENLDRWYLGLETYMMIINPEENGETEMGPPDNVVFCGQLQSLEKETSSAPGSTSSNVLASLVVAAVSALFLISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51480		SKS2	SKU5 similar 2 (.1)		Lus10038920 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Lus10002609 [exp]	3.7	0.9725
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	5.1	0.9697
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	5.9	0.9664
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	8.0	0.9669
					Lus10023996 [exp]	8.1	0.9287
AT4G37160		SKS15	SKU5 similar 15 (.1)		Lus10019642 [exp]	8.1	0.9692
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	9.5	0.9651
AT4G33590			unknown protein		Lus10041131 [exp]	9.9	0.9601
AT4G12470		AZI1	azelaic acid induced 1 (.1)		Lus10032261 [exp]	10.0	0.9503
AT3G08030			Protein of unknown function, D...		Lus10016393 [exp]	10.5	0.9601

Compare expression of checked genes

Lus10038920 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.