Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 457 / 6e-146 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 298 / 7e-87 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 288 / 6e-83 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 277 / 3e-79 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 277 / 4e-79 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 275 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 272 / 2e-77 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 266 / 1e-74 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 266 / 1e-74 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58400 255 / 1e-71 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027281 [exp] 1740 / 0 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 466 / 2e-149 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 459 / 2e-146 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 447 / 6e-142 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 435 / 7e-137 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 431 / 2e-135 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 424 / 4e-133 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 349 / 7e-105 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 205 / 3e-56 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G134500 [exp] 617 / 0 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 584 / 0 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 583 / 0 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 582 / 0 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 570 / 0 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 569 / 0 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 565 / 0 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 551 / 0 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 550 / 0 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 530 / 4e-175 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10038983 pacid=23150378 polypeptide=Lus10038983 locus=Lus10038983.g ID=Lus10038983.BGIv1.0 annot-version=v1.0 ATGAACATTCAGAATCTTCTTCCCCCCTATATCAACAAACACACACCACAACCAATTTCAACCACATTCCCCATTGATTCGAGGCCTTCTCATGATGGTT ATGGGATGGCGGACCAATTCCTATTGAGCCCTTCTTCTCATAATCGTTACGAGATGGCGGCGTACGGAGCAGTGGCGTTCCTCCTCGCGAAAATTGAAGG ATTGGTGTCACGCGAGTACGGACTTCTGTCCGGAATCGACAAGGCAGTGGAAGAGCTCCGTCGCGAGTTCCAAACCATACAGGCCTTCCTGCAGGAAGCC GACGCCAGGGGGCAGACGAACGAGCAAGTCAGAGTATGGGTAAGCCAAGTACGCGACTTGGCCTACGACATCGAAGACGCACTCGACACGTTCACTTTCC ACACCTCGGTACGGAGCAGCTTGCATCTCTACCCTGAATTCCTCCAGCTCAGGAAGCGCCACTCCGTCGCCGTTTTGATCCAGGACATCAACTCCAAGCT CTCTAGCGTCCGCCAAACTAGGGAGCGTTACCGCCAGCTAGGCGCCTCCCCCGCCCCACCACTCGCCACCGTGGCATCCCAAGAGAGCTTCACCACCCAT TTCAACCGGGTGGCTCCTCTGTTCGAGACGGAGCCACTTGGTATAGACAGGTCACTGTCTGAATTCACGGCCTGGGCCAAGTTTGGGGAGCCTAGGCTGA AGGTTCGGTTTGTGGTTGGAATGGGTGGTTTGGGTAAGACCCTGTTGGCAAAGCGGGTGTACGAAGCTGCGAAACACGGGTTCGAATTCGACTGTTGGGG TTGGATTCAGATATCGAGGTCCCAGAGCAAAGAGCAAGTCCTCTGGACGATGCTGAAACGGTTGTTCGAATCGAGCAACGAGCCCATCCCTCCCGAGTTT CATACCATCAACGTCGTCCAATTGATGGAGAAACTGGCGAGCTTCCTCAACGACAAAAAATACATCCTGGTATTCGACGACCTATGGAACAGAGACCTCT GGGAATCAATCAAATGCGCTCTGCCGACCGGGAGGCATTCAAGAATCATGATCACCACAAGGCGTGGCGACATCGCGCATTTTTGCAGCTATGATCAAGC CACGGCGGTCTACAATGTTGAGCCGTTGACTTCTTCCATGTCTCAGGAGCTCTTCTTCAGGAAGGCATTTCCTGCTACAGGGGAGTGCCCTTCCTCAGGA TTGCTAGACTGGGCCAGGAAATTCCTGACGCAGTGTGAAGGATGGCCTTTAGGGATCATCACGATAGGAAAAGTCGCGTCGAAGATCGATCAAACCTCCG ACTCGTGGAGACAGCTACACGACAGCCTGGGATCGGAGATGGAGAAAGGAGGCCGCCTTTCGAGCATTACCAAGGTGCTCTCAGCGAGCTACTCCGATCT TCCGTATTATCTGAAATACTGTCTGCTTTATTTCGCCATTTTTCCGGAGCATTATTCGATTAAGCGGAGAAGGCTGATTCGGATGTGGATTTCGGAAGGG CTGGTGAAGGAAGAGACCGGGAAGACCCCTGAAGAAGTGGCGCATAATTACCTCGAAGAGCTGATACAGAGGAATCTCGTCCTGGTCAACGAAATCGACT TCGATGGACGGGCCAAGACTTGCCGGGTTCATCGACTCCTCCACAAAATTATTGTTTCCATTTCTAAAGAAGAAAACTTCTGCAGGGTTTCTGCAGGAAA CCCTGCAGAAGTATTGAACGACAGAGTTCGTCGTTTGTCGGTTCGTAAAAGCAGGATGGGGCTATCCGGGACGACAAGCTCGAGCTTCCCTTGTGCTAGA TCATTTTTCGTGTTTGGAATCGAAGATCTGACGTATTCGAAATCCCAATCCATTCTCTCGAGCTTCAGCATTTTAAAAGTCCTGGATCTCGAAGGAGCGC CTCTCGATAAATTCCCTACCGCAATTCTCAATTTGGTACTTCTCAAGTACTTGAGCTTGAGGAATACCAGCATCAGGAAGCTTCCCAGATCAATTGGCAA GCTTCGGAATTTGGAAACTCTCGACCTGAAGCAGACATTCGTGACGTCTGTTCCAGCAAAGATATTCAGGCTGGGGAAGCTAAGGCATTTGCTGATTTAT CATTACAGCATTAGGATTCACGTAACGATCGATAGCGTCCAGGGATTCAGAGCTTCCGCAAGCATAGGGAAGTTAGTTTCTCTTCAGAAGCTGACATGTC TAAGCGCAAACAGAGACGTCAGGATGCTGGTGGCCTTAAAAAACCTGACGAACTTGAAAAAATTGGGAATTGTGGAGTTGAGAGAAGAGGATGGCAGGCA TCTCTGTTTTTCGATCGAAAAGATGCCAAACCTCCAAACGTTAGACTTGGCCGCGGCAATGAAAGACGAGGTGATCGATCTGAACGTTCTCCGAGAACCA CCAAGGATGCTTCGACGTCTGTTTCTGAAAGGGAAGCTTCAGAAGCTTCCGGGGTGGGTCTCGTCGTTACACGACCTGGTGAGGATCGGGCTAAGATGGT CGAAGCTGGAGGTTAGCCCGATCGATGCACTCGAGCATCTGCCCAATTTGAGGGAGATTCAGTTGGTGGATGCTTACGCAGGAAAGCAACTGGTTTTCAG TTCAGGAAAGTTTCAGAATCTGAAAGTTTTGATGGTTGAGAATTTGGAATCTCTGGAAGAGATAGTGATTAAGAGCGGGAGCTTGCAGAGGCTTGAAAGT CTCGTGATAAGGCAGTGCAAGATGATGGAGCAGGTTCCTGAAGGGATCGACAGGCTGAGCCAAATGAAAGAGTTGCAGCTTTACGATATGTCGGAGAATC TGGTGAACCAGATTCAAGTCGATGGGGCATTTCGGCAGTTGGTTCATCATATTCCTTTCATCTGTGCCTACACTCTCGAGAGCGGCGGGTATTGGCGGCC TAAGGTTCTTTCGTGA
AA sequence Show only first row Show all	>Lus10038983 pacid=23150378 polypeptide=Lus10038983 locus=Lus10038983.g ID=Lus10038983.BGIv1.0 annot-version=v1.0 MNIQNLLPPYINKHTPQPISTTFPIDSRPSHDGYGMADQFLLSPSSHNRYEMAAYGAVAFLLAKIEGLVSREYGLLSGIDKAVEELRREFQTIQAFLQEA DARGQTNEQVRVWVSQVRDLAYDIEDALDTFTFHTSVRSSLHLYPEFLQLRKRHSVAVLIQDINSKLSSVRQTRERYRQLGASPAPPLATVASQESFTTH FNRVAPLFETEPLGIDRSLSEFTAWAKFGEPRLKVRFVVGMGGLGKTLLAKRVYEAAKHGFEFDCWGWIQISRSQSKEQVLWTMLKRLFESSNEPIPPEF HTINVVQLMEKLASFLNDKKYILVFDDLWNRDLWESIKCALPTGRHSRIMITTRRGDIAHFCSYDQATAVYNVEPLTSSMSQELFFRKAFPATGECPSSG LLDWARKFLTQCEGWPLGIITIGKVASKIDQTSDSWRQLHDSLGSEMEKGGRLSSITKVLSASYSDLPYYLKYCLLYFAIFPEHYSIKRRRLIRMWISEG LVKEETGKTPEEVAHNYLEELIQRNLVLVNEIDFDGRAKTCRVHRLLHKIIVSISKEENFCRVSAGNPAEVLNDRVRRLSVRKSRMGLSGTTSSSFPCAR SFFVFGIEDLTYSKSQSILSSFSILKVLDLEGAPLDKFPTAILNLVLLKYLSLRNTSIRKLPRSIGKLRNLETLDLKQTFVTSVPAKIFRLGKLRHLLIY HYSIRIHVTIDSVQGFRASASIGKLVSLQKLTCLSANRDVRMLVALKNLTNLKKLGIVELREEDGRHLCFSIEKMPNLQTLDLAAAMKDEVIDLNVLREP PRMLRRLFLKGKLQKLPGWVSSLHDLVRIGLRWSKLEVSPIDALEHLPNLREIQLVDAYAGKQLVFSSGKFQNLKVLMVENLESLEEIVIKSGSLQRLES LVIRQCKMMEQVPEGIDRLSQMKELQLYDMSENLVNQIQVDGAFRQLVHHIPFICAYTLESGGYWRPKVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	0	1
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	1.4	0.9753
AT2G26930		CMK, CMEK, ISPE...	PIGMENT DEFECTIVE 277, 4-\(cyt...		Lus10026783 [exp]	4.7	0.9732
AT2G23770			protein kinase family protein ...		Lus10000577 [exp]	6.5	0.9719
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	7.7	0.9693
AT1G06840			Leucine-rich repeat protein ki...		Lus10019114 [exp]	8.1	0.9615
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	8.4	0.9699
AT1G49670		NQR	ARP protein (REF) (.1), ARP pr...		Lus10027904 [exp]	10.5	0.9682
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10000344 [exp]	10.8	0.9519
					Lus10031841 [exp]	10.8	0.9689
AT3G11920			glutaredoxin-related (.1)		Lus10012909 [exp]	11.1	0.9516

Compare expression of checked genes

Lus10038983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.