Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10760 229 / 6e-73 GARP Homeodomain-like superfamily protein (.1) AT5G05090 195 / 1e-60 GARP Homeodomain-like superfamily protein (.1) AT2G40970 170 / 4e-51 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT5G59570 142 / 9e-40 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT3G46640 138 / 5e-38 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) AT3G16857 100 / 3e-23 GARP ARR1 response regulator 1 (.1.2) AT5G58080 97 / 7e-22 GARP ARR18 response regulator 18 (.1) AT4G16110 96 / 1e-21 GARP ARR2 response regulator 2 (.1) AT2G01760 91 / 2e-20 GARP ARR14 response regulator 14 (.1) AT2G25180 89 / 2e-19 GARP ARR12 response regulator 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027291 [exp] 437 / 1e-154 AT5G05090 266 / 2e-87 Homeodomain-like superfamily protein (.1) Lus10010442 [exp] 273 / 2e-90 AT3G10760 271 / 5e-90 Homeodomain-like superfamily protein (.1) Lus10012102 [exp] 261 / 6e-86 AT3G10760 274 / 3e-91 Homeodomain-like superfamily protein (.1) Lus10040780 [exp] 127 / 3e-35 AT3G46640 182 / 9e-57 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Lus10041020 [exp] 97 / 8e-22 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10037719 [exp] 97 / 8e-22 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 97 / 8e-22 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10019058 [exp] 96 / 1e-21 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10005340 [exp] 96 / 1e-21 AT2G25180 414 / 3e-137 response regulator 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G032600 [exp] 282 / 5e-94 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1) Potri.006G034900 [exp] 281 / 2e-93 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1) Potri.009G035000 [exp] 135 / 1e-36 AT3G46640 250 / 3e-81 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.001G243600 [exp] 128 / 6e-34 AT3G46640 233 / 8e-74 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.008G135500 [exp] 99 / 9e-23 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 99 / 2e-22 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 97 / 5e-22 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 97 / 6e-22 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G111300 [exp] 95 / 3e-21 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G262100 [exp] 94 / 5e-21 AT2G25180 381 / 6e-124 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10038996 pacid=23150710 polypeptide=Lus10038996 locus=Lus10038996.g ID=Lus10038996.BGIv1.0 annot-version=v1.0 ATGAGGGATGACGAGTCCAATTGGTTCGCTAGATGGGATGAGGAGCTTCCTTCACCTGACGAGCTCATGCCCATCACTCAAACCCTAATTACTCCTGATC TCGCTCTCGCTTTCGACATCCGTACCACTCCCACCACCGCCACTACCGCCGCCGCAGTCAATAATTCACTTCATCATAATCAACCACTTCCAACGCCTCC GCCTCCTCCTCCTCCTCCTCTTCCTTCTTTACCCGCCGGAAGCCTTCCTTCTCCCAATACCAACAATCCTAATTCTCTTGCGAATTCCTCTGAATTTGCT CCGGACTCCTCTGCTGAGCTGGGATCCGGCACCGGAGGCGACGAGCCTGCCAGGACGCTGAAGCGTCCCAGGCTGGTGTGGACTCCGCAGCTCCACAAGA GGTTTGTCGATGCGGTGGCGCACCTGGGGATCAAGAACGCTGTTCCCAAGACAATAATGCAGCTCATGAGTGTCGACGGGTTGACTCGGGAGAATGTCGC TAGTCATCTACAGAAGTATAGGCTGTACCTTAAGCGGATGCAAGGTTTGTCTTCCTCCGCCGCCAACGGAGGCGGAAGTTCCTCCTCCACCTCTGGCGTC GACGCAGCCACCGACCATTTGTTTGCCAGCTCGCCGGTGCCGGCGCATTTCTTGCATCCTGCAGCTGTTGCTGCTGCCGGGAGGCCGCCTAATTCCGATC ATTTCTTGCCGTTTGATCCCATCAGTGCGCTTCAGCATCATCACCATCACCAACAGATGGCGGCGGCTGTGGGAGGACATCCGGGTCAGTATCATCATAG GCAGATGGGGCATTTCGGGTCACCTCCGACCAATGGACAATTTGATCACCATCCATTTCTGGCTAGGCAGCAAGCTGTGCATAGGATGGGGCCTCCTGTC CGGAATGCTGTACCGGCAGGGTATAATGTGGAGGATTTGGAGTCGGCAACTAATGGTAATGGCGGTGGGAGGAAAGTTCTTACTCTGTTTCCTACTGCTG ATGATTGA
AA sequence Show only first row Show all	>Lus10038996 pacid=23150710 polypeptide=Lus10038996 locus=Lus10038996.g ID=Lus10038996.BGIv1.0 annot-version=v1.0 MRDDESNWFARWDEELPSPDELMPITQTLITPDLALAFDIRTTPTTATTAAAVNNSLHHNQPLPTPPPPPPPPLPSLPAGSLPSPNTNNPNSLANSSEFA PDSSAELGSGTGGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSSSAANGGGSSSSTSGV DAATDHLFASSPVPAHFLHPAAVAAAGRPPNSDHFLPFDPISALQHHHHHQQMAAAVGGHPGQYHHRQMGHFGSPPTNGQFDHHPFLARQQAVHRMGPPV RNAVPAGYNVEDLESATNGNGGGRKVLTLFPTADD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	1.7	0.8408
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10017626 [exp]	2.4	0.7827
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	3.7	0.8228
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	4.0	0.7930
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	5.2	0.8170
AT5G54250		HLM1, DND2, ATC...	DEFENSE, NO DEATH 2, cyclic nu...		Lus10004509 [exp]	5.9	0.7869
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10032594 [exp]	11.0	0.7436
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	16.6	0.7159
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	16.7	0.7290
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10033643 [exp]	17.0	0.7243

Compare expression of checked genes

Lus10038996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.