Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 167 / 8e-51 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 167 / 1e-50 GARP Homeodomain-like superfamily protein (.1.2) AT1G69580 142 / 1e-40 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 142 / 1e-40 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G04030 140 / 2e-39 GARP Homeodomain-like superfamily protein (.1.2.3) AT2G01060 134 / 6e-38 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G18240 134 / 8e-37 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT5G45580 130 / 1e-36 GARP Homeodomain-like superfamily protein (.1) AT3G12730 129 / 1e-36 GARP Homeodomain-like superfamily protein (.1) AT4G28610 112 / 1e-28 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038735 [exp] 420 / 5e-151 AT3G24120 177 / 8e-55 Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 170 / 2e-51 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 169 / 5e-51 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 150 / 1e-42 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 146 / 5e-41 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 139 / 9e-40 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 141 / 1e-39 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 141 / 2e-39 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10036758 [exp] 135 / 2e-38 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G001200 [exp] 235 / 4e-77 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 176 / 4e-54 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 171 / 3e-52 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 144 / 4e-41 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 137 / 2e-39 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.013G060200 [exp] 137 / 5e-38 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.008G087600 [exp] 135 / 5e-38 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.011G023600 [exp] 133 / 5e-38 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.003G100100 [exp] 134 / 6e-38 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1) Potri.010G174100 [exp] 135 / 8e-38 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039123 pacid=23150615 polypeptide=Lus10039123 locus=Lus10039123.g ID=Lus10039123.BGIv1.0 annot-version=v1.0 ATGTTCCAGGATTACGAAATGCAAAATCCCGTCTACGGTCGACGGCTGGGCTACGGAGGTGCAGTAGTAGGAGGAGGAGAGTATCCGGGAGAAGTTGTGC TGACTTCCGATCCGAAGCCTCGCCTCCGTTGGACTGCTGATCTTCACGACCGATTCGTCGACGCCGTCACTCAGCTCGGTGGCCCCAATAAAGCGACACC GAAGGGGATTTTGAGGACGATGAATGTGAAAGGACTTACTCTCTTCCATTTAAAGAGTCATCTCCAGAAATACAGAATGGGTAAGCAATTAGTAGGGAAG GATCATATGGGTGGTGATTCCACCAAGGATGATGATGGACTCGTCGAGCTTCCTCAAGCTTCACCAGACACCACAGTCTCCGATGATGTCAACGAGGGGT ACCAAGTGAAGGAAGCGCTGAGGGCTCAAATGGAAGTGCAGAGTAAACTCTACCTTCAAGTTGTGGCTGAGAAGCACTTGCGCATTCGTCAGGAAGCGGA GTGTAGGTACTTGGCGATGCTTGATCAAGCTTGCAAGCTTCTGGCTAACCAGTTCATCACCGAGTCGATGAGTCTGAACACGAACACGAATTTCTCCTCT GTCAGCCATCCCGCCACCATTGGCGGTAGTATTCAACACCAGGGGACTGATTGCTCCACAGAGAGCTGCTTGACTTCTTCACACGGGACGGAATCCGCGA GAATCTCCTGCTGGAGGGAAGACAGACAATGA
AA sequence Show only first row Show all	>Lus10039123 pacid=23150615 polypeptide=Lus10039123 locus=Lus10039123.g ID=Lus10039123.BGIv1.0 annot-version=v1.0 MFQDYEMQNPVYGRRLGYGGAVVGGGEYPGEVVLTSDPKPRLRWTADLHDRFVDAVTQLGGPNKATPKGILRTMNVKGLTLFHLKSHLQKYRMGKQLVGK DHMGGDSTKDDDGLVELPQASPDTTVSDDVNEGYQVKEALRAQMEVQSKLYLQVVAEKHLRIRQEAECRYLAMLDQACKLLANQFITESMSLNTNTNFSS VSHPATIGGSIQHQGTDCSTESCLTSSHGTESARISCWREDRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24120	GARP		Homeodomain-like superfamily p...		Lus10039123 [exp]	0	1
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	2.6	0.8249
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	9.4	0.7799
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10011301 [exp]	10.0	0.7906
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10004434 [exp]	13.4	0.7713
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	13.7	0.7915
AT4G32190			Myosin heavy chain-related pro...		Lus10041037 [exp]	16.0	0.7996
AT5G19860			Protein of unknown function, D...		Lus10039187 [exp]	16.4	0.7546
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	17.5	0.7815
					Lus10008547 [exp]	18.0	0.7647
AT5G48970			Mitochondrial substrate carrie...		Lus10006521 [exp]	20.2	0.7479

Compare expression of checked genes

Lus10039123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.