Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01060 350 / 5e-122 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 170 / 8e-50 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT3G04450 169 / 1e-49 GARP Homeodomain-like superfamily protein (.1.2) AT4G13640 162 / 8e-48 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 160 / 3e-47 GARP Homeodomain-like superfamily protein (.1.2) AT5G29000 162 / 4e-47 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT5G06800 160 / 1e-46 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT1G79430 157 / 2e-45 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G13040 157 / 8e-45 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G20400 149 / 5e-42 GARP myb-like HTH transcriptional regulator family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038734 [exp] 531 / 0 AT2G01060 324 / 1e-111 myb-like HTH transcriptional regulator family protein (.1.2) Lus10005036 [exp] 167 / 1e-50 AT2G01060 175 / 4e-54 myb-like HTH transcriptional regulator family protein (.1.2) Lus10027806 [exp] 166 / 4e-50 AT2G01060 172 / 6e-53 myb-like HTH transcriptional regulator family protein (.1.2) Lus10004809 [exp] 166 / 6e-50 AT2G01060 171 / 5e-52 myb-like HTH transcriptional regulator family protein (.1.2) Lus10008197 [exp] 171 / 9e-50 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10002483 [exp] 163 / 9e-49 AT2G01060 168 / 6e-51 myb-like HTH transcriptional regulator family protein (.1.2) Lus10024938 [exp] 168 / 1e-48 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 167 / 3e-48 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10016676 [exp] 159 / 1e-46 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G000800 [exp] 409 / 2e-144 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 397 / 5e-140 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G101000 [exp] 174 / 2e-53 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 173 / 7e-51 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 174 / 8e-51 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.019G020900 [exp] 171 / 3e-50 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.001G314800 [exp] 168 / 4e-50 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.016G117000 [exp] 166 / 4e-50 AT2G01060 173 / 4e-53 myb-like HTH transcriptional regulator family protein (.1.2) Potri.013G048000 [exp] 167 / 3e-48 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.017G054800 [exp] 162 / 5e-48 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039124 pacid=23150721 polypeptide=Lus10039124 locus=Lus10039124.g ID=Lus10039124.BGIv1.0 annot-version=v1.0 ATGGACCCTGGCAATCACATGGACAACAACAGCCTTGCCTCCAAGCAGCGATTGCGTTGGACTCATGAACTTCATGAACGTTTTGTGGATTCTGTTGCAC AACTTGGTGGGCCAGATAGAGCTACTCCAAAAGGTGTTCTCAGGGTCATGGGTGTACAGGGTTTAACTATATATCATGTCAAAAGTCATTTACAGAAATA TCGACTCGCCAAGTACCTTCCAGACTCCTCCTCTGATGGCAACAAAACTGACAAGAAAGAAACAGGGGACATGGTTTCCAATTTAGATGGCTCATCTGGA ATGCAAATCACAGAAGCTCTCAAGCTCCAAATGGAGGTGCAAAAGAGACTGCATGAACAGCTAGAGGCAATTTTTTCTGGAGTGCAGCGACAGTTACAGC TCCGCATCGAAGCACAGGGGAAATACTTGAAGAAGATAATAGAAGAGCAGCAGCGACTAAGTGGTGTGCTCTCAGAAGGACCCGGATCCGGGGTTCCACA GGGTTCAGCCGACCCGGAATCCGACAAGACTGACCCGGCAACTCCCGTCCCAACAACAGAGACACCCCTCCAGGACAAGGCCACAAAGGAACGTGGGATG AACAAGAGCCTTTCGGTTGATGAAACTTTGCATCATCATCACCACCCAGAGCCAATGACTCCTGATTCGCAAGGTGATATGGTGGGTTCCCCGGACGACA GTCCTACAGCCGAGAGGTCGTTGAAGAAGCAGCGTTTAAACATGGGTGGCACACAACAATATGGTAAGCAGGACCTCCTCGCACAGCACCGGATACTGGA GTCAAGCTTAAACTCCTACGCTCAGTCACATGCTCACGCTGGCTTTGCGGCCAGTAGAGAGGCGTTCGATCATCCTTCGTCAGGTCTATGA
AA sequence Show only first row Show all	>Lus10039124 pacid=23150721 polypeptide=Lus10039124 locus=Lus10039124.g ID=Lus10039124.BGIv1.0 annot-version=v1.0 MDPGNHMDNNSLASKQRLRWTHELHERFVDSVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGNKTDKKETGDMVSNLDGSSG MQITEALKLQMEVQKRLHEQLEAIFSGVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLSEGPGSGVPQGSADPESDKTDPATPVPTTETPLQDKATKERGM NKSLSVDETLHHHHHPEPMTPDSQGDMVGSPDDSPTAERSLKKQRLNMGGTQQYGKQDLLAQHRILESSLNSYAQSHAHAGFAASREAFDHPSSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10039124 [exp]	0	1
AT1G53730		SRF6	STRUBBELIG-receptor family 6 (...		Lus10003926 [exp]	2.2	0.7658
AT4G31080			Protein of unknown function (D...		Lus10009546 [exp]	6.3	0.7602
AT2G44870			unknown protein		Lus10020395 [exp]	10.1	0.7533
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033962 [exp]	11.4	0.7436
AT5G24810			ABC1 family protein (.1.2)		Lus10020168 [exp]	11.5	0.7446
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10007291 [exp]	11.7	0.7302
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	20.0	0.7091
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029624 [exp]	20.5	0.7392
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10002880 [exp]	25.7	0.7192
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10033504 [exp]	29.0	0.7113

Compare expression of checked genes

Lus10039124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.