Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13620 680 / 0 Amino acid permease family protein (.1) AT5G05630 415 / 1e-141 Amino acid permease family protein (.1) AT1G31830 413 / 7e-141 Amino acid permease family protein (.1.2) AT3G19553 395 / 4e-134 Amino acid permease family protein (.1) AT1G31820 389 / 9e-132 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013757 [exp] 651 / 0 AT3G13620 536 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 647 / 0 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 644 / 0 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 422 / 2e-144 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 418 / 2e-139 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 405 / 7e-138 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10040966 [exp] 385 / 8e-130 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 385 / 1e-129 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10020320 [exp] 48 / 1e-05 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007300 [exp] 704 / 0 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 613 / 0 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.003G103600 [exp] 401 / 4e-136 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.004G178000 [exp] 375 / 3e-126 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.001G296100 [exp] 375 / 6e-126 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 372 / 1e-124 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.013G065000 [exp] 47 / 3e-05 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 46 / 5e-05 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.019G039700 [exp] 44 / 0.0002 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10039180 pacid=23150553 polypeptide=Lus10039180 locus=Lus10039180.g ID=Lus10039180.BGIv1.0 annot-version=v1.0 ATGGCTGAAATCTCCTCGCCGACAGCAAACCATCAGCTCCCGACAACAGTCAACAAGAAGACCACCCCGATTAAGAAGAAGAAGCAGCTGACTCTCCTCC CTCTGATTTTCCTAATCTACTTCGAAGTCGCCGGCGGCCCTTACGGTGAAGAGCCCGCCGTCCAAGCCGCCGGACCACTCTTCGCCATCCTCGGATTCCT GATCTTCCCCTTTATCTGGAGCATCCCGGAAGCTCTCATCACTGCCGAGCTCTCCACCGCCTACCCTGGAAACGGCGGGTTCGTGATCTGGGCCGATCGG GCTTTCGGACCCTTCTTCGGATCCATGATGGGCTCCCTGAAATTCCTCAGCGGAGTCATCAACGTCGCCGCCTTCCCCGTCCTCTGCATCGACTACTTGA AGAAGGTATTCCCTGCTCTCGATTCCGGCTGGCCTAGAAACGTTTCGGTCATCGGTTCGACCCTAGCTCTGTCTTTCTTGAACTATACAGGACTAGCAAT TGTGGGTTATTTCGCAGTGTTTCTAGGGATCGTCTCCCTCTCACCATTCGTGATCATGTCGATCATGGCGATCCCGAAGCTCAAACCGAAAAGATGGATC AGTCTTGGCGACAAAGGAGTGAAAAAGGACTGGAATTTATACTTCAACACTCTGTTCTGGAACTTAAACTTCTGGGACAGCGTCAGCACTCTAGCCGGAG AAGTCGAGAAGCCAGGCAAAACATTCCCACTCGCATTATTCATAGCCGTGATCTTCACCTGCGTGTCGTACTTAATCCCTCTATTCGCCGTAATCGGCGC GGTCTCCGTAGACCAATCCGCGTGGGAATCGGGTTTCCACGCGACGGCTGCCGAGATCATAGCCGGGAAGTGGCTCAAGTACTGGCTCGAAATCGGGGCT GCATTGTCAGCCCTCGGATTGTTCGAGGCCCAGCTCAGCAGCTGTGTCTACCAGCTGTTGGGCATGGCCGAGCTGGGCAGTCTACCCAGCTTTTTCGCCC TGCGGTCGAAGTGGTTCAACACCCCCTGGGTCGGGATCGTGGTCTCGACCGCGATCACGATCGCGTGCTCGTACATGGATTTCGAGGACATTGTCTCGTC CGCGAACTTCCTGTACACCCTGGGGATGTTGTTGGAATTTGCGTCGTTTTTGTGGCTGAGGAAGAAGCTGCCGATGCTGAAGAGGCCTTACCGGGTTCCG ATGAAGCTGCCCGGGTTGGTCATGATGTGTTTGGTGCCGTCGTGTTTTCTGGTGATCATTGTTGTTGTGGCTAACAAGACTGTGTATCTGGTGAGTGGGC TCATGACTGTTGGTGCTGTTGGATGGTATTATCTGATGAATTTCTGTAAGTCGAAGAAGGTTTTTGCATTCAGCGATGGCCAGCAAGACTGTGATGATGA AGATGATGGATAA
AA sequence Show only first row Show all	>Lus10039180 pacid=23150553 polypeptide=Lus10039180 locus=Lus10039180.g ID=Lus10039180.BGIv1.0 annot-version=v1.0 MAEISSPTANHQLPTTVNKKTTPIKKKKQLTLLPLIFLIYFEVAGGPYGEEPAVQAAGPLFAILGFLIFPFIWSIPEALITAELSTAYPGNGGFVIWADR AFGPFFGSMMGSLKFLSGVINVAAFPVLCIDYLKKVFPALDSGWPRNVSVIGSTLALSFLNYTGLAIVGYFAVFLGIVSLSPFVIMSIMAIPKLKPKRWI SLGDKGVKKDWNLYFNTLFWNLNFWDSVSTLAGEVEKPGKTFPLALFIAVIFTCVSYLIPLFAVIGAVSVDQSAWESGFHATAAEIIAGKWLKYWLEIGA ALSALGLFEAQLSSCVYQLLGMAELGSLPSFFALRSKWFNTPWVGIVVSTAITIACSYMDFEDIVSSANFLYTLGMLLEFASFLWLRKKLPMLKRPYRVP MKLPGLVMMCLVPSCFLVIIVVVANKTVYLVSGLMTVGAVGWYYLMNFCKSKKVFAFSDGQQDCDDEDDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13620			Amino acid permease family pro...		Lus10039180 [exp]	0	1
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027429 [exp]	4.0	0.8858
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10011657 [exp]	12.9	0.8669
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10018179 [exp]	18.4	0.8290
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	23.7	0.8556
AT5G66590			CAP (Cysteine-rich secretory p...		Lus10016787 [exp]	26.4	0.8573
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	30.6	0.8206
AT2G23910			NAD(P)-binding Rossmann-fold s...		Lus10003780 [exp]	42.3	0.7880
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10042663 [exp]	47.6	0.7780
AT3G13840	GRAS		GRAS family transcription fact...		Lus10022097 [exp]	74.7	0.8044
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10033102 [exp]	78.7	0.7712

Compare expression of checked genes

Lus10039180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.