Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39130 573 / 0 Transmembrane amino acid transporter family protein (.1) AT3G54830 458 / 3e-156 Transmembrane amino acid transporter family protein (.1) AT5G02180 421 / 1e-141 Transmembrane amino acid transporter family protein (.1) AT5G02170 407 / 7e-137 Transmembrane amino acid transporter family protein (.1.2) AT3G09340 403 / 4e-135 Transmembrane amino acid transporter family protein (.1) AT3G09330 403 / 5e-135 Transmembrane amino acid transporter family protein (.1) AT2G41190 342 / 3e-111 Transmembrane amino acid transporter family protein (.1) AT3G28960 266 / 1e-83 Transmembrane amino acid transporter family protein (.1) AT5G15240 243 / 2e-74 Transmembrane amino acid transporter family protein (.1.2) AT5G16740 190 / 2e-54 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038702 [exp] 425 / 6e-145 AT2G39130 556 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 414 / 2e-137 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10024374 [exp] 372 / 7e-123 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 330 / 1e-105 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 342 / 5e-103 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10037974 [exp] 309 / 4e-99 AT2G39130 551 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10012824 [exp] 295 / 3e-94 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 287 / 3e-91 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 286 / 7e-91 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036300 [exp] 560 / 0 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 558 / 0 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 436 / 1e-147 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 286 / 6e-91 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.017G083700 [exp] 284 / 4e-90 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 275 / 5e-87 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.008G086500 [exp] 272 / 8e-86 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 268 / 5e-84 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.018G099700 [exp] 243 / 8e-75 AT3G28960 348 / 6e-118 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 196 / 2e-56 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10039190 pacid=23150426 polypeptide=Lus10039190 locus=Lus10039190.g ID=Lus10039190.BGIv1.0 annot-version=v1.0 ATGAAGAACTCGGCGTCGGACGAGAGTTTGAACTACGTTGACAGCGAGGAGGATGAAGAGAGCAGAGAAGCTAACGTCGTCGGCGGTGAGGGGAAGAAGG TCGACCCTGCCGGCGGAGTTGTAATTCGGTCGGGTTCGGAGGAACACATGGATTCGGATCATCACCACCGTCAGCAGTCGGGTTTCAAACCCGGTTCCCA TACTCCTTCTTGGCCACAGAGTTACAGGATGTCGATGGACATGTACACAAGCGTATCCCCGACCATAAACTTCCTCAAGAGCCCAATGTCCCGGCAAGGC AGCTCATTCCTCACCACTTCATTCCGAAGAAGACCAACTTCAGAACTACTTCCAACCGCCATCACCGAAGCTGCTGCTACACCGTTGCTGCACAAGGAAC TAGATGATCAGGCTGATGATAAGGACGAAAAGTACCGTACACTGAAGCAACAGAGATCCTCTGTTTTCTCACTCGGCAATATCCCTTCCGCCGCGGCCGA CTACGATCCGGCCGAATTGCGCAGGAGCTCTTACGGGCAGGCGGTGCTGAACGGGGTGAACGTGCTGTGCGGGATAGGGATACTGTCGACGCCGTACGCG GTTAAAGAAGGAGGGTGGTTGGGTTTGGGAGTGTTGCTCATATTTGCTCTGCTTTCGTTTTATACAGGTTTGCTTCTGCGGTATTGTCTGGACAGCCAGC CTGGTCTCGAGACTTACCCTGACATTGGTCAAGCCGCATTTGGCACTCCTGGTCGCATTGCTTTCGCTGTTATCTTGTACGTGGAGTTGTATGCGTGTTG TGTGGAGTACATAATACTAGAGAGCGACAATTTGTCTGCATTGTTTCCGAACGCACATCTAAGCTTGGGAGGACTCGAGCTAGATCCCCGACACTTGTTC GCACTCCTAGCCACCCTCGCCGTTCTCCCCACCGTATGGCTCCGCGATCTCAGCATCCTCAGTTACATATCCGCTGGTGGAGTGGTTGCGACAATATTGG TAGTGATATGCTTGTTCTGGGGTGGGATAGTGGAGGATGTCGGCATCCACAGTAGAGGCACATTCCTCAACTTGGGAACTCTGCCTGTCGCCATTGGTCT CTACGGCTACTGTTACCAAGGCCATGCTGTCTTCCCCAACATCTACAGTTCCATGGCTAAGCCCGACCAATACCCTTCTGTCCTTGTTGCTTGCTTTCTC ATTTGCACGGTGATGTACGTGGGAGTTGGAGTCATGGGGTACACCATGTTCGGGGAAGCCACGCAGTCTCAATTCACTCTTAACATGCCTGCTCAACTGC TTACTTCGAAGATCGCTGTGTGGACTACGGTGTTGTTGATCATCACGTATGCATTAACAATGACACCAGTAGCAATGAGCCTAGAGGAGCTGATACCGGC AAACAAGAGATCATACCTTCACATCATATCCATTAGAACAGTGCTCGTTATCTCCACTTTGGTCGTTGCCATTTCCGTCCCTTTCTTCGGTCCCGTGTTG TCGTTGATCGGTTCTCTTCTCACAATGTTTGTTACCTTGATTCTTCCTTGTGCTAGCTACCTAAGCATATTGAGAAATAAAGTGAACCGTTACCAGATTT GGCTGTGTTTGTTAATAATCACAGTGGGACTAATATCTTCAGCATTTGGGACCTATTCTGCAATATTAAGTATTGTTCAGAATCTCAGCGGCTAG
AA sequence Show only first row Show all	>Lus10039190 pacid=23150426 polypeptide=Lus10039190 locus=Lus10039190.g ID=Lus10039190.BGIv1.0 annot-version=v1.0 MKNSASDESLNYVDSEEDEESREANVVGGEGKKVDPAGGVVIRSGSEEHMDSDHHHRQQSGFKPGSHTPSWPQSYRMSMDMYTSVSPTINFLKSPMSRQG SSFLTTSFRRRPTSELLPTAITEAAATPLLHKELDDQADDKDEKYRTLKQQRSSVFSLGNIPSAAADYDPAELRRSSYGQAVLNGVNVLCGIGILSTPYA VKEGGWLGLGVLLIFALLSFYTGLLLRYCLDSQPGLETYPDIGQAAFGTPGRIAFAVILYVELYACCVEYIILESDNLSALFPNAHLSLGGLELDPRHLF ALLATLAVLPTVWLRDLSILSYISAGGVVATILVVICLFWGGIVEDVGIHSRGTFLNLGTLPVAIGLYGYCYQGHAVFPNIYSSMAKPDQYPSVLVACFL ICTVMYVGVGVMGYTMFGEATQSQFTLNMPAQLLTSKIAVWTTVLLIITYALTMTPVAMSLEELIPANKRSYLHIISIRTVLVISTLVVAISVPFFGPVL SLIGSLLTMFVTLILPCASYLSILRNKVNRYQIWLCLLIITVGLISSAFGTYSAILSIVQNLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	0	1
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	1.7	0.9554
AT5G55980			serine-rich protein-related (....		Lus10011094 [exp]	2.0	0.9434
AT1G63500			Protein kinase protein with te...		Lus10008494 [exp]	3.0	0.9261
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Lus10018888 [exp]	4.5	0.9249
					Lus10011059 [exp]	5.7	0.9178
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10038738 [exp]	6.7	0.9160
AT4G24480			Protein kinase superfamily pro...		Lus10042868 [exp]	6.7	0.9083
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10005718 [exp]	8.8	0.9197
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	11.7	0.9207
AT1G63500			Protein kinase protein with te...		Lus10008530 [exp]	11.8	0.9059

Compare expression of checked genes

Lus10039190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.