Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45050 105 / 2e-26 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45260 105 / 4e-26 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G36930 102 / 2e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G36140 100 / 1e-24 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G19520 99 / 5e-24 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17890 95 / 2e-22 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT3G51560 94 / 2e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45230 93 / 7e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16890 92 / 9e-22 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G36150 87 / 7e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013729 [exp] 321 / 4e-107 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10000121 [exp] 184 / 3e-56 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 184 / 7e-54 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 182 / 6e-53 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 143 / 1e-39 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 139 / 4e-38 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 127 / 6e-34 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014829 [exp] 122 / 3e-32 AT5G17680 441 / 1e-136 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018021 [exp] 108 / 2e-27 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069500 [exp] 127 / 5e-34 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 127 / 8e-34 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.T002300 [exp] 119 / 3e-31 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G066500 [exp] 119 / 3e-31 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G068300 [exp] 119 / 6e-31 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 119 / 6e-31 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 118 / 7e-31 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G021681 [exp] 118 / 9e-31 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 118 / 1e-30 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 117 / 1e-30 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10039211 pacid=23150619 polypeptide=Lus10039211 locus=Lus10039211.g ID=Lus10039211.BGIv1.0 annot-version=v1.0 ATGGTGACTAGTAAGGATCACCAGGTTCTGAAGATAGTATGCGACGAAATCTACGAAGTCAAGGGACTGGACGGTGACGAATCTCTAGAGCTCTTCGTTT TGAGATGGTTTGGCAAATGGAAATCCGGTCGTGAAAATGCACAAGATTCAATTGTTGTAAACGATGATGATCGTCCGGAGGAGTACTACATCGAGCTGTC GAAGAAGGTTGTGAACTACACGGGAGGGAATCCATTAGCGATTATTATTTTCGGGAAGGCTCTGAAAGGTAGGAGCAGAGAGTATTGGGATAGTACATTG TTCAGACTACAGAGGATACCGAATGAAATGATACAGAGGATGTTGAAAGCGAGCTTCGAAAGGCTGGACTGCGACGAGAAGAACAGGTTCCTCAACATTG CTGTTTCTTTTAAGGGAGAGAGTAAAGAGTATGTGAAGTCGAGATCGGATGATGCTTATGGGTATGGATCGTCGGAGTACATCATAACTACCCTTGCTGA CAAATCCTTGGTGAGGGTTTCGCCCGATGATGATGAGAGGGTCGAGATGCACGGTTTGGTGCAGGAAATGGGGCGTGGGATTGTTAACGAGGATTGGAAC TAG
AA sequence Show only first row Show all	>Lus10039211 pacid=23150619 polypeptide=Lus10039211 locus=Lus10039211.g ID=Lus10039211.BGIv1.0 annot-version=v1.0 MVTSKDHQVLKIVCDEIYEVKGLDGDESLELFVLRWFGKWKSGRENAQDSIVVNDDDRPEEYYIELSKKVVNYTGGNPLAIIIFGKALKGRSREYWDSTL FRLQRIPNEMIQRMLKASFERLDCDEKNRFLNIAVSFKGESKEYVKSRSDDAYGYGSSEYIITTLADKSLVRVSPDDDERVEMHGLVQEMGRGIVNEDWN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45050	WRKY	ATWRKY16, TTR1	TOLERANT TO TOBACCO RINGSPOT N...		Lus10039211 [exp]	0	1

Compare expression of checked genes

Lus10039211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.