Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25560 189 / 1e-58 MYB LAF1, ATMYB18 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) AT3G48920 186 / 9e-58 MYB ATMYB45 myb domain protein 45 (.1) AT5G52260 182 / 2e-56 MYB ATMYB19 myb domain protein 19 (.1) AT1G57560 169 / 2e-50 MYB ATMYB50 myb domain protein 50 (.1) AT4G01680 164 / 2e-49 MYB ATMYB55 myb domain protein 55 (.1.2.3) AT5G26660 166 / 1e-48 MYB ATMYB4, ATMYB86 myb domain protein 86 (.1) AT1G09540 166 / 1e-48 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) AT5G12870 161 / 6e-48 MYB ATMYB46 myb domain protein 46 (.1) AT3G12720 161 / 2e-47 MYB ATMYB67, AtY53 myb domain protein 67 (.1) AT3G13890 160 / 9e-47 MYB ATMYB26, MS35 MALE STERILE 35, myb domain protein 26 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027458 [exp] 503 / 0 AT4G25560 190 / 4e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Lus10005740 [exp] 326 / 2e-112 AT5G52260 194 / 3e-61 myb domain protein 19 (.1) Lus10005739 [exp] 319 / 9e-110 AT5G52260 186 / 4e-58 myb domain protein 19 (.1) Lus10027456 [exp] 303 / 7e-103 AT5G52260 184 / 2e-56 myb domain protein 19 (.1) Lus10038395 [exp] 167 / 7e-50 AT3G12720 233 / 2e-75 myb domain protein 67 (.1) Lus10001226 [exp] 166 / 1e-49 AT3G12720 231 / 8e-75 myb domain protein 67 (.1) Lus10031281 [exp] 167 / 2e-49 AT3G08500 228 / 1e-72 myb domain protein 83 (.1) Lus10038022 [exp] 166 / 9e-48 AT4G01680 273 / 8e-90 myb domain protein 55 (.1.2.3) Lus10039610 [exp] 164 / 1e-47 AT5G12870 219 / 3e-69 myb domain protein 46 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143400 [exp] 262 / 4e-87 AT4G25560 189 / 9e-59 LONG AFTER FAR-RED LIGHT 1, myb domain protein 18 (.1) Potri.012G140500 [exp] 257 / 4e-85 AT5G52260 189 / 9e-59 myb domain protein 19 (.1) Potri.015G082700 [exp] 175 / 4e-52 AT1G57560 254 / 2e-82 myb domain protein 50 (.1) Potri.012G084100 [exp] 172 / 6e-51 AT5G26660 253 / 1e-81 myb domain protein 86 (.1) Potri.005G001600 [exp] 168 / 8e-49 AT1G09540 376 / 1e-128 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.003G155700 [exp] 165 / 8e-49 AT3G12720 240 / 1e-77 myb domain protein 67 (.1) Potri.002G185900 [exp] 168 / 1e-48 AT1G09540 291 / 5e-95 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 61, myb domain protein 61 (.1) Potri.009G053900 [exp] 165 / 1e-48 AT5G12870 224 / 8e-72 myb domain protein 46 (.1) Potri.014G111200 [exp] 167 / 2e-48 AT4G01680 282 / 3e-93 myb domain protein 55 (.1.2.3) Potri.008G081600 [exp] 164 / 2e-48 AT3G12720 262 / 2e-86 myb domain protein 67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039213 pacid=23175590 polypeptide=Lus10039213 locus=Lus10039213.g ID=Lus10039213.BGIv1.0 annot-version=v1.0 ATGGAAGAATGCAAAGACCAGAAGCCAACGAAGCCCAAGCACCGGAAGGGCTTGTGGTCGCCGGAGGAAGACCACCGCCTCCGTAGCTACATCGTTAAGA ACGGCCACGGCTGCTGGACCACCGTCCCCATCAACGCCGGCCTTCAAAGAAATGGAAAGAGTTGCAGGCTAAGGTGGATTAATTATCTACGGCCAGGATT AAGGCGCGGTTTGTTTTCCGCTCATGAAGAAGACACAATCGTGACCCTTCATCGTCTCCTCGGTAATAAGTGGTCACAGATCTCGCAACATTTACCAGGA CGAACCGACAATGAAATCAAAAACCATTGGCACTCGTATCTCAAGAAAAAGTTAACGAAATCTCAAGGAATTGCTTCAAACGACAATAATAATAATAAGA TCCAACAATTTCCTAGCTCCTCTAACTCCGACAATAACCCAAGCACCAACCACAACCTCTCGCAGGACCACCGCGACGAGCCCGCACTGTCGTCCACGAC AACATCAGCCACCGATAAGTACTCTGTCCCGTTGTTGCCACCGAAACTCATATTCGCCGAGTGGCTATCGATGGACAGCTTCCCCACCAATCCAGCTGCC GAACCGTTGTTTTGTGATAGGGATTTCGCTAGTGGGAGCAGCGAGTATGGTCTTGACATCCCAAATAGCGGATTCTTCAGTGATCATTTGTTTCAAGGCG GGTACCAACTTTGTGGCGAAAGAGGAGGGTATCGGAACTCGATGGCCACAACGGTGAGCGATGGATCAGCCAGCGACGTGTTTTCGTCACAGTTTAATTT CGAAGATCAGAGTTCGGACAACAGTAGTCAGTTCGTTGAGTTCTGCAGCGATTTCCAGATCAATAGTGACAGTGTTTTGTATATATGA
AA sequence Show only first row Show all	>Lus10039213 pacid=23175590 polypeptide=Lus10039213 locus=Lus10039213.g ID=Lus10039213.BGIv1.0 annot-version=v1.0 MEECKDQKPTKPKHRKGLWSPEEDHRLRSYIVKNGHGCWTTVPINAGLQRNGKSCRLRWINYLRPGLRRGLFSAHEEDTIVTLHRLLGNKWSQISQHLPG RTDNEIKNHWHSYLKKKLTKSQGIASNDNNNNKIQQFPSSSNSDNNPSTNHNLSQDHRDEPALSSTTTSATDKYSVPLLPPKLIFAEWLSMDSFPTNPAA EPLFCDRDFASGSSEYGLDIPNSGFFSDHLFQGGYQLCGERGGYRNSMATTVSDGSASDVFSSQFNFEDQSSDNSSQFVEFCSDFQINSDSVLYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10039213 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10026974 [exp]	2.8	0.8685
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005740 [exp]	7.0	0.8356
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10034666 [exp]	9.5	0.8415
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Lus10007404 [exp]	10.8	0.8148
AT4G35160			O-methyltransferase family pro...		Lus10023987 [exp]	11.4	0.8620
AT4G25590		ADF7	actin depolymerizing factor 7 ...		Lus10014977 [exp]	12.0	0.7994
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028886 [exp]	13.3	0.8468
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	14.1	0.8315
AT2G37460			nodulin MtN21 /EamA-like trans...		Lus10007696 [exp]	15.2	0.8426
AT3G59440			Calcium-binding EF-hand family...		Lus10020171 [exp]	17.7	0.8341

Compare expression of checked genes

Lus10039213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.