Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61250 200 / 8e-63 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G28110 194 / 2e-60 MYB ATMYB41 myb domain protein 41 (.1) AT5G16770 192 / 3e-59 MYB ATMYB9 myb domain protein 9 (.1.2) AT4G21440 191 / 1e-58 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G02940 187 / 2e-57 MYB ATMYB107 myb domain protein 107 (.1) AT4G05100 186 / 4e-57 MYB ATMYB74 myb domain protein 74 (.1) AT2G31180 183 / 7e-57 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G34670 186 / 9e-57 MYB ATMYB93 myb domain protein 93 (.1) AT5G15310 182 / 1e-55 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G10280 182 / 2e-55 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027459 [exp] 405 / 1e-143 AT3G61250 229 / 3e-74 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 196 / 3e-61 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10041142 [exp] 195 / 1e-60 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10036472 [exp] 194 / 3e-60 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10030378 [exp] 188 / 3e-58 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10018418 [exp] 189 / 4e-58 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 185 / 2e-56 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10039743 [exp] 182 / 2e-56 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10033889 [exp] 183 / 3e-56 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143500 [exp] 220 / 2e-70 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.012G140700 [exp] 212 / 1e-67 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.002G157600 [exp] 209 / 4e-66 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.014G081200 [exp] 199 / 3e-62 AT3G61250 352 / 6e-122 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 193 / 3e-59 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.007G093900 [exp] 189 / 6e-58 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.011G041600 [exp] 189 / 8e-58 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G164900 [exp] 188 / 1e-57 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.011G125900 [exp] 187 / 2e-57 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 187 / 4e-57 AT1G34670 290 / 1e-96 myb domain protein 93 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039214 pacid=23175630 polypeptide=Lus10039214 locus=Lus10039214.g ID=Lus10039214.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGTCCTTGCTGCGACAGAAATGGTGTGAAGAGAGGAGCTTGGAGTGCTGAAGAAGACGAAATCCTCTCTGATTACATCAACAAGAATGGCC ATGGAAGCTGGCGCACTCTCCCTCAGAATGCAGGGTTACTTCGATGTGGGAAGAGTTGCCGTTTAAGGTGGACAAACTACCTTCGTCCTGATATCAAACG TGGCTCTTTCAGTCCTGAAGAAGAATCTACCATTGTTGGCCTTCAAGCCACCCTTGGTAACAAGTGGGCTTCCATAGCATCTCAATTACCGGGGAGGACA GACAACGAGATCAAGAACCACTGGAACACCCACCTCAAGAAACGATTCCCCGCTCCTCTTCCCAAGAAAGCTGCCCCGAACAAGGTCGAGGCTTGGCAGG CATCCATGGATGAGTCTTCATCAATGCTGCTGACTAATACTCCTCCTCTTCCTCCTCCTCCTCCATCCTCTCCGGTGAGTCAAAACTTCGCCAAAGATCA CTATCTCAAGCTGTGGTACTCGGACGTTGGGGAGTCATTCCGCAACATCAGGGTCGAGTGCGAGAGCTCAAACTCCCAAGTGTCCTCGTTCTCGAAATTG GGGTCTGGATCGGTCGATGACACACTCACTACTATGATGGCTACCCCCACCACCGCCACCACCAATCTAGTGGACGCGACCAACATGATGGTCGGGCCAA ACCCGGGTCTAGATGGGATGGTAAGTAGCTCGGGCTCAATCAACTCTAACGAGTTCACGAGTTACTCGGACACAGCATTGAAACAGCTGCTAGCTATGCC TGGTGGGAATAGTGTCATGGAGTTCTTGGAAAATGATGATGTTTTCACCAACTTTCCTTTTAGATGTGACTGA
AA sequence Show only first row Show all	>Lus10039214 pacid=23175630 polypeptide=Lus10039214 locus=Lus10039214.g ID=Lus10039214.BGIv1.0 annot-version=v1.0 MGRSPCCDRNGVKRGAWSAEEDEILSDYINKNGHGSWRTLPQNAGLLRCGKSCRLRWTNYLRPDIKRGSFSPEEESTIVGLQATLGNKWASIASQLPGRT DNEIKNHWNTHLKKRFPAPLPKKAAPNKVEAWQASMDESSSMLLTNTPPLPPPPPSSPVSQNFAKDHYLKLWYSDVGESFRNIRVECESSNSQVSSFSKL GSGSVDDTLTTMMATPTTATTNLVDATNMMVGPNPGLDGMVSSSGSINSNEFTSYSDTALKQLLAMPGGNSVMEFLENDDVFTNFPFRCD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10039214 [exp]	0	1
AT3G63300		FKD1	FORKED 1 (.1.2)		Lus10004079 [exp]	2.8	0.9553
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	3.0	0.9602
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10021319 [exp]	3.7	0.9333
AT1G14600	GARP		Homeodomain-like superfamily p...		Lus10035093 [exp]	4.2	0.9539
AT3G49950	GRAS		GRAS family transcription fact...		Lus10018498 [exp]	4.5	0.9530
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Lus10006733 [exp]	9.8	0.9332
AT3G05470			Actin-binding FH2 (formin homo...		Lus10004505 [exp]	10.4	0.9338
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10039738 [exp]	11.4	0.9407
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10027937 [exp]	12.2	0.8299
					Lus10010102 [exp]	13.2	0.8718

Compare expression of checked genes

Lus10039214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.