Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52510 431 / 7e-143 GRAS SCL8 SCARECROW-like 8 (.1) AT1G21450 254 / 1e-75 GRAS SCL1 SCARECROW-like 1 (.1) AT5G48150 211 / 8e-61 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 202 / 3e-58 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 202 / 2e-56 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 187 / 8e-52 GRAS SCL13 SCARECROW-like 13 (.1) AT1G66350 149 / 2e-38 GRAS RGL1 RGA-like 1 (.1) AT3G03450 140 / 3e-35 GRAS RGL2 RGA-like 2 (.1) AT5G59450 140 / 6e-35 GRAS SCL11 GRAS family transcription factor (.1) AT5G17490 133 / 6e-33 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027505 [exp] 719 / 0 AT5G52510 443 / 2e-149 SCARECROW-like 8 (.1) Lus10042776 [exp] 243 / 7e-72 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 243 / 1e-71 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10016596 [exp] 220 / 1e-63 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 204 / 1e-60 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10035840 [exp] 208 / 1e-58 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 202 / 4e-57 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 197 / 3e-55 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 197 / 4e-55 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G078800 [exp] 502 / 6e-170 AT5G52510 482 / 1e-162 SCARECROW-like 8 (.1) Potri.017G142400 [exp] 491 / 8e-166 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1) Potri.002G073400 [exp] 240 / 1e-70 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.005G186500 [exp] 237 / 2e-69 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 216 / 7e-62 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.001G361700 [exp] 213 / 5e-61 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 214 / 6e-61 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 206 / 7e-58 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.016G009700 [exp] 188 / 9e-52 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 177 / 8e-48 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10039265 pacid=23175698 polypeptide=Lus10039265 locus=Lus10039265.g ID=Lus10039265.BGIv1.0 annot-version=v1.0 ATGGCATCTGGATTCCCCGGCGGAGGAGGATTCAGCGGCAGCGGTGGCGGCGGTTCAGACTCCTACTTCGCCGGCAGATCGATGAACTCCTCCTCATTCA ACCCCAACAACACCACACAGCTTCCTTACAGAGCTCAGCAACAGCTCCCGCAAATCTTCCTTGACCAATCGTCTCAGATCGGCCACCAACGGAACCACCA CCACCACCACCTCCTCCAACAACAGCAGCAGCAGCAGTCTCCGGCGAGCAGTTGCATGGGGAAAAGAGCCCTTTCCGATTTCCAGGGGATAAATCCAGGC TTGAATTCGTTACTCCTCCGCTCAGTGAAGCCGAGGATTTACCAGAATAACTGCAGTGATTTCTCCGGTAATTTGGCTATTAATAATAATAATTTCTCAG CGGAGAATTCGTTTTCTGCTCTTTCTTCTCAGCGGTACGGATTGCCGCTCCTTCAGCAGCTCAGGCCTCAGCCTATCAATGTTCTTCCTCAACAAACTCT GCAGGGAGTTCCGTTTGCTCAAACCCGGACTCAGAATAACAAGCCAGTTTCCGTTTCCGTCGGGTCGGGTGGACCGGGTCAGGATTCGGAGAAGAAAATG ATGAATCGGCTTCAGGAGCTGGAGAAGCAGCTTCTGGATGACGATGAGGAAGCGGAGGGTGAAGAAGGACAATCCGACGCTGTTTCGGTCATCACTAACG CAAACAGCGAGTGGTCGGAGACGATTCAGAATCTAATCACTCCTTCGTCCAGTCCCAACGAAAAGAACAGCAACAACGTCGGCCAGAATCAGATTTCTCC GTCACCGAGTCCTTCGTCGTCGTCGTCCACGACCTCCTCTTCGACGACCACGGCGGCTACGGCAAAGCCTCCTCCTTCTTCCTCCCTGGCGATCTGTTCG AGGCAGGTGCTGTTGGAAGCCGCCTCCGTTATATACGACGGGAAGCCCGAATCCGCGGCGGAGATCTTGTCACGATTGACCAAGTCTAACGGGAAAGGAA ATTCGGAGCAGAGACTGATGGATTACTTGTTTTCAGCGCTGAAATCGAGGGTGAATCCGGCGGAGAATCCGCCGCCGGTTGCTGATTTGTACGGGAAGGA GCACTCCGAGTCGACTCAGCTGCTTTTCGAGCTGTCTCCTTGCTTCAAGCTAGGGTTCATGGCTGCTAATCTCGCGATTCTTGAAGCTGCTCTAGAAGAA GGGAATAGTAATAATAACAACAAGAAGACCGTTTTTCATGTGGTGGATTTTGATTTGGGGAAAGGCAGACAGTACATGAATCTTCTCTACGCTTTATCGG AGAAGGTCAATGGGAAAAATCCTGCCACGGCGGGGGCGGTGTTGGTTAAGATCACGGCGGCGGCGTTGGATTCTGTTGAGGAGGAGAAAGAGAGACTGAA TACGGTGGGGGAAACGCTCCGTCAAGTCGCGGAGCGAGTGGGAGTCACGCTCCAATTCAAAGTCGTGAGCTGCAATCTCACTGATCTGACCCGGGAATCG CTCGGGTGCGAACCGGACGAACCGCTGGCGGTTAATTTCGCATTCAAGCTGTACCGAATGCCCGACGAGAGCGTGTCGACGGACAACCCGAGGGACGAGC TTCTGAGGCGCGTGAAGGCAATGGAGCCGAGGATCGTGACGACGGTGGAGCAAGAGATGCACGCGAACACCGCCCCGTTCTTGACTCGGGTGAACGAGGC CTGCAGGTACTACTCGGCTTTGTTCGAGTCGATCGATTTGACCGTGCCAGGAGAACCCGAGAGGGAAAAAGTCGAGCAAGGGCTCGGACGGAAGCTAGCA AACACGATCGCCTGCGAGGGGAGGGACCGAGTGGAACGGTGCGAGGTGTCGGGGAAATGGCGGGCGAGGATGGGGTTGGCCGGGTTCAAGAGGGAGCCGC TGAGCGAGAAGGTGACCGAGTCGATGAAGGCGAGGCTCGAATCGGGGAACCGAGCCAACCCGGGGTTCACGGTTCAAGAAGAGAATGGCGGGGCTTGTTT CGGTTGGATGGGGAAAGCACTCACGGTCGCTTCCGCTTGGCGTTAA
AA sequence Show only first row Show all	>Lus10039265 pacid=23175698 polypeptide=Lus10039265 locus=Lus10039265.g ID=Lus10039265.BGIv1.0 annot-version=v1.0 MASGFPGGGGFSGSGGGGSDSYFAGRSMNSSSFNPNNTTQLPYRAQQQLPQIFLDQSSQIGHQRNHHHHHLLQQQQQQQSPASSCMGKRALSDFQGINPG LNSLLLRSVKPRIYQNNCSDFSGNLAINNNNFSAENSFSALSSQRYGLPLLQQLRPQPINVLPQQTLQGVPFAQTRTQNNKPVSVSVGSGGPGQDSEKKM MNRLQELEKQLLDDDEEAEGEEGQSDAVSVITNANSEWSETIQNLITPSSSPNEKNSNNVGQNQISPSPSPSSSSSTTSSSTTTAATAKPPPSSSLAICS RQVLLEAASVIYDGKPESAAEILSRLTKSNGKGNSEQRLMDYLFSALKSRVNPAENPPPVADLYGKEHSESTQLLFELSPCFKLGFMAANLAILEAALEE GNSNNNNKKTVFHVVDFDLGKGRQYMNLLYALSEKVNGKNPATAGAVLVKITAAALDSVEEEKERLNTVGETLRQVAERVGVTLQFKVVSCNLTDLTRES LGCEPDEPLAVNFAFKLYRMPDESVSTDNPRDELLRRVKAMEPRIVTTVEQEMHANTAPFLTRVNEACRYYSALFESIDLTVPGEPEREKVEQGLGRKLA NTIACEGRDRVERCEVSGKWRARMGLAGFKREPLSEKVTESMKARLESGNRANPGFTVQEENGGACFGWMGKALTVASAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	0	1
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	1.0	0.9115
AT1G75140			unknown protein		Lus10010815 [exp]	1.4	0.8728
AT2G34180		ATWL2, CIPK13, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025396 [exp]	2.4	0.8479
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10035104 [exp]	8.2	0.8149
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10017102 [exp]	10.9	0.8078
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	11.4	0.8115
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	14.1	0.8109
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10025650 [exp]	16.0	0.8064
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	17.0	0.8042
AT1G22610			C2 calcium/lipid-binding plant...		Lus10001538 [exp]	17.9	0.8020

Compare expression of checked genes

Lus10039265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.