Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27950 182 / 2e-54 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G23750 150 / 6e-42 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT5G53290 143 / 5e-39 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT3G61630 132 / 2e-35 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G11140 120 / 2e-31 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT2G46310 114 / 6e-29 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT1G71130 103 / 3e-26 AP2_ERF CRF8 cytokinin response factor 8, Integrase-type DNA-binding superfamily protein (.1) AT1G22985 96 / 3e-23 AP2_ERF CRF7 cytokinin response factor 7, Integrase-type DNA-binding superfamily protein (.1) AT5G13330 96 / 8e-23 AP2_ERF RAP2.6L related to AP2 6l (.1) AT1G03800 95 / 3e-22 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027573 [exp] 660 / 0 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10032353 [exp] 155 / 9e-44 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10033938 [exp] 148 / 5e-41 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 140 / 2e-38 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10003037 [exp] 110 / 4e-28 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10018756 [exp] 112 / 2e-26 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10016827 [exp] 95 / 7e-22 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10014054 [exp] 93 / 2e-21 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10003601 [exp] 93 / 3e-21 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023200 [exp] 213 / 7e-66 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.012G032900 [exp] 203 / 9e-62 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 162 / 1e-46 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.014G094500 [exp] 150 / 3e-42 AT2G46310 163 / 3e-48 cytokinin response factor 5 (.1) Potri.001G094800 [exp] 150 / 7e-42 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.003G136300 [exp] 145 / 8e-40 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.019G131300 [exp] 132 / 3e-35 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.013G158500 [exp] 127 / 2e-33 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 97 / 7e-23 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.005G219600 [exp] 94 / 2e-22 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10039324 pacid=23175538 polypeptide=Lus10039324 locus=Lus10039324.g ID=Lus10039324.BGIv1.0 annot-version=v1.0 ATGGACCCGAGTTTTCTCTGTCCGGCCAAGTACACTGAGCATCGAAGTCTCACCAGAAAATATATCACCACTGCTAAACCCTCTTTAAAACGCAGGAAAA GCCCTGCCATGGAGTCGGGTCATCCGACCCGGGTCGTTCGGATATCCGTCACCGACCCTGATGCGACTGACTCATCCAGCGATGAGGAGTCTGAGTTCTT CGGCCGGAGGCGGGTCAAGCGATATGTGGAAGAGATCAGCATCGGTTGCGAGGAGGTTTCCACTGCTGCCGCTGCTCCTGCTCTTCCGGCCAGGAAGAGA ACGGTGGCGGAGGAAGTGCGGCCGGTCCAGAGCGGGGGAGGAGGAGGGAAGAAGTTTAGAGGTGTGCGGCAGCGGCCGTGGGGGAAATGGGCGGCGGAGA TTCGGGATCCGGTGAAGAGACAGAGGTTGTGGTTGGGGACTTATAATACTGCTGAGGAGGCGGCGATGGTTTACGACAACGCCGCGATTAAGCTCCGGGG ACCCGACGCCCAGACGAATTTCATCAATCCGATCGGGAAGGAAGTTGAAAAGCCGGTGGAATCGACATCCGTCTGCGGGTACGACTCCGGCGACGAGTCC TCGCATAACAACAACAACCTTTCCTCTCCAACTTCCGTTCTTCAGTTCAGAACTGATGAGTACTCCGAGCCGGCTGAGCCGTTGGTTGAGCCGGACGAGC CGATGGAGTTACTTTTAGCCGAGCCGGTTGGGGAAGAGGAAGCCACAGCTGGACTCCAGTTTCTGCAGGAGTGTGAAGGGGAAAGTAGTCATTGCAATAA TAACGATATTAATCACAACAACCAAATCACCGACTTTTACGGAGACGACGACTTCTCGGGCGAGTGTTACTACTCGCCGCAGCATCTCTCCTCGTTTTTG GAGGAATCGACGTCGTTTACTGACGATCTGTTCAACTTCACCGGCTGCTGCGAAGAGGAAGCGAAGCTCCTCCAGCCGCCGCCGATTGCTTTCAACGACG ATAACGAATCAATCGTCGCCAGCGGGGCCGCTCTGTTGCAGGAGAGCTTCTCTATTCGATGCGACGATATTTTCGCAGACATTCCCAATGTTGGGAACGA TTCCGCCCTTCAAGAAAACGATGACGACTATTTCCAGGACATCGGTGATTTGTTTTTCTCGGAACCTCTAGTGTCGCTTTGA
AA sequence Show only first row Show all	>Lus10039324 pacid=23175538 polypeptide=Lus10039324 locus=Lus10039324.g ID=Lus10039324.BGIv1.0 annot-version=v1.0 MDPSFLCPAKYTEHRSLTRKYITTAKPSLKRRKSPAMESGHPTRVVRISVTDPDATDSSSDEESEFFGRRRVKRYVEEISIGCEEVSTAAAAPALPARKR TVAEEVRPVQSGGGGGKKFRGVRQRPWGKWAAEIRDPVKRQRLWLGTYNTAEEAAMVYDNAAIKLRGPDAQTNFINPIGKEVEKPVESTSVCGYDSGDES SHNNNNLSSPTSVLQFRTDEYSEPAEPLVEPDEPMELLLAEPVGEEEATAGLQFLQECEGESSHCNNNDINHNNQITDFYGDDDFSGECYYSPQHLSSFL EESTSFTDDLFNFTGCCEEEAKLLQPPPIAFNDDNESIVASGAALLQESFSIRCDDIFADIPNVGNDSALQENDDDYFQDIGDLFFSEPLVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10039324 [exp]	0	1
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10033555 [exp]	5.2	0.8697
AT1G77760		GNR1, NIA1	nitrate reductase 1 (.1)		Lus10035402 [exp]	18.8	0.8172
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	21.0	0.8454
AT4G24730			Calcineurin-like metallo-phosp...		Lus10017960 [exp]	25.8	0.8347
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	37.1	0.7942
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	39.8	0.7969
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	46.3	0.8238
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10020659 [exp]	97.8	0.7959
AT2G29360			NAD(P)-binding Rossmann-fold s...		Lus10010876 [exp]	125.9	0.7900
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	134.8	0.7589

Compare expression of checked genes

Lus10039324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.