Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53170 1024 / 0 FTSH11 FTSH protease 11 (.1) AT2G26140 555 / 0 FTSH4 FTSH protease 4 (.1) AT5G15250 406 / 5e-131 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 397 / 2e-127 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 396 / 3e-127 FTSH8 FTSH protease 8 (.1) AT1G50250 390 / 2e-124 FTSH1 FTSH protease 1 (.1) AT5G42270 387 / 2e-123 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G07510 348 / 8e-108 FTSH10 FTSH protease 10 (.1) AT2G29080 346 / 7e-107 FTSH3 FTSH protease 3 (.1) AT3G47060 328 / 2e-100 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001060 [exp] 1400 / 0 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10014930 [exp] 1012 / 0 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10038819 [exp] 1006 / 0 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10021824 [exp] 399 / 6e-128 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10012277 [exp] 391 / 7e-128 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10001054 [exp] 396 / 3e-127 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 396 / 6e-126 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10016003 [exp] 391 / 6e-125 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001573 [exp] 354 / 7e-110 AT1G07510 1194 / 0.0 FTSH protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G000700 [exp] 1040 / 0 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.015G020700 [exp] 1040 / 0 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 547 / 0 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.002G215100 [exp] 400 / 2e-128 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 397 / 5e-127 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 396 / 6e-127 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 394 / 5e-126 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 392 / 6e-126 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.016G099800 [exp] 350 / 2e-108 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.009G033600 [exp] 347 / 3e-107 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10039334 pacid=23175583 polypeptide=Lus10039334 locus=Lus10039334.g ID=Lus10039334.BGIv1.0 annot-version=v1.0 ATGGCGATAGCTCTCCAAGCTTCACTCCTCTTCAGACCTTCCTTCTCTTTCAATTTCAAACACCCTCTTCGCCGCCACAACAATTTCTCCTCTCTTCACT ACCCAATTCGCCGCCTTTCCTGCACATTGCATCCCGATACCCCCAATTTCGACTCCAATCCCCTCTCTTCCTCCTCTTCCTCCTCTTTCAATTATTTCCC TCCTCTTTCCGATTCCGCTTTACCCGACAACGATGCCATTCATCTCGACCCTTCAACTCTCGGATTGGCCTCCGACCCCCACAACGCCGGCGAACCCGAC TTCAAAAACGACGACACCTTGCCCACCGGCGACAAATCACCTCCGTCGGCGGCGGAGCTCTACCCGACGGTGGCTTTCCTCATGTGGATTTGGTCAGCTT TGAAAAGAGGAATTGATAGCTTGTTGCGGTCCATTTCGTTCAACAGGTACCACCCATTTCAGCGAGACGCCAGCCTGTTGGATACACTGCTTGCTGAAGC TGATGCGAACCCCAAAGACCCTCTGAAGCAAACCCAACTCTTGGTAGAGCTCAGTAAGCACAGTCCGGAGGAAGTGATAATGAGGTTTGAAGAAAGAGAT CATTCAGTGGACAGTAGAGGAGTGGCGGAATATATTAAAGCACTTGTGAACACTAATGCTATTGATGATTTCCTTCCCGATGATAAATCTGGGAAGCCTT CAAGCCTTCCTGCTTTGCTGCAAGAACTTAAGCAGCGTGCAGCTGGAAACACGGATGAGCCTTTTGTTAATCCTGGCGTGTCTGAGAAGCAACCGTTGCA TGTGATGATGGTTGATCCGAGAGCTTCGCCACACAAGTCTCGGTCAAACAAGTCACGGTTCACGTCTGAGTTTATCTACACTATTCTTCTCACTGTTGGA ACTATACTAATCTGGTTAATGGGTGCTGCTGCTCTTCAGAGATATATAGGGAATCTGGGAGGAATAGGAGGTTCGGGAGTTGGATCGAGTTCATCCTATT CTCCAAAGGAACTTAACAAAGAAGTCATGCCAGAGAAAAATGTTAAAACATTCAAGGATGTGAAAGGGTGCGACGATGCTAAACAAGAGCTCGAGGAAGT GGTCGAATACCTTAGGAACCCTACAAAATTTACTAGGCTTGGCGGAAAGTTGCCCAAGGGAATTCTTTTGACTGGAGCACCAGGAACTGGAAAAACGTTG CTCGCAAAGGCTATTGCTGGAGAAGCTGGAGTTCCTTTCTTCTATAGAGCAGGATCAGAGTTCGAGGAAATGTTTGTTGGTGTTGGTGCGAGGCGTGTAA GATCCTTGTTCCAAGCAGCTAAGAAGAAGGCTCCTTGTATTATATTTATCGACGAAATCGATGCCGTTGGTTCGACACGTAAACAATGGGAAGGCCACAC GAAGAAGACTTTACATCAATTACTTGTCGAAATGGACGGTTTCGAACAGAACGAGGGAATAATTCTAATGGCTGCAACAAACTTGCCTGATATCCTTGAT CCCGCTTTGACCAGGCCTGGTAGATTCGATAGACATATAGTAGTTCCAAGTCCTGACGTACGTGGACGGCAGGAGATATTGGACCTCTACTTGAAAGATA AACCGATTTCGGAAGACGTGGATGTTAAAGCAATTGCACGGGGTACCCCGGGCTTTAATGGAGCAGATCTTGCGAACTTGGTAAACATTGCTGCCATTAA AGCTGCAGTGGAAGGAGCTGAGAAGTTAAATTCCGCGCAGTTAGAGTTTGCGAAAGACAGGATAGTTATGGGAACTGAGCGCAAGACAATGTTCGTATCA GAAGAGTCAAAGAAGTTGACTGCATATCACGAGAGTGGACATGCCATCGTAGCATTTCATACCGAGGGTGCACACCCGATTCACAAGGCAACCATAATGC CTCGCGGATCTGCTCTAGGAATGGTGGCCCAACTTCCTTCAGACGACGAGACTTCGATCAGCAAGAAGCAGTTGCTGGCTCGGCTAGACGTTTGCATGGG TGGAAGAGTGGCTGAAGAGCTCATCTTCGGTCGAGACCATGTCACCACTGGAGCAAGTAGTGATCTCAACTCTGCTACAGAGCTCGCACATTATATGGTA TCTAGGTGTGGAATGAGCGATGAAATCGGGCCAGTCCACGTCAAGGAACGGCCCAGCTCAGAAATGCAATCGCGGATTGATGCTGAAGTTGTGAAGCTCC TGAGAGAAGCGTACGAGCGAGTGAAGGCCCTGTTAAAGAAGCATGAGAAGGCATTACACGCCCTGGCAAATGCTCTTCTGGAGTACGAAACACTTACTGC AGAAGAGATAAAGCGGGTTCTGTTGCCTTTTCGGGAAGGAAAGCTCCCCGAGCAGCAAGAAGAAGAACAACAAGACCAAGAACAAGGTGATCTTGTGATG GCTTGA
AA sequence Show only first row Show all	>Lus10039334 pacid=23175583 polypeptide=Lus10039334 locus=Lus10039334.g ID=Lus10039334.BGIv1.0 annot-version=v1.0 MAIALQASLLFRPSFSFNFKHPLRRHNNFSSLHYPIRRLSCTLHPDTPNFDSNPLSSSSSSSFNYFPPLSDSALPDNDAIHLDPSTLGLASDPHNAGEPD FKNDDTLPTGDKSPPSAAELYPTVAFLMWIWSALKRGIDSLLRSISFNRYHPFQRDASLLDTLLAEADANPKDPLKQTQLLVELSKHSPEEVIMRFEERD HSVDSRGVAEYIKALVNTNAIDDFLPDDKSGKPSSLPALLQELKQRAAGNTDEPFVNPGVSEKQPLHVMMVDPRASPHKSRSNKSRFTSEFIYTILLTVG TILIWLMGAAALQRYIGNLGGIGGSGVGSSSSYSPKELNKEVMPEKNVKTFKDVKGCDDAKQELEEVVEYLRNPTKFTRLGGKLPKGILLTGAPGTGKTL LAKAIAGEAGVPFFYRAGSEFEEMFVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIILMAATNLPDILD PALTRPGRFDRHIVVPSPDVRGRQEILDLYLKDKPISEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEKLNSAQLEFAKDRIVMGTERKTMFVS EESKKLTAYHESGHAIVAFHTEGAHPIHKATIMPRGSALGMVAQLPSDDETSISKKQLLARLDVCMGGRVAEELIFGRDHVTTGASSDLNSATELAHYMV SRCGMSDEIGPVHVKERPSSEMQSRIDAEVVKLLREAYERVKALLKKHEKALHALANALLEYETLTAEEIKRVLLPFREGKLPEQQEEEQQDQEQGDLVM A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53170		FTSH11	FTSH protease 11 (.1)		Lus10039334 [exp]	0	1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10027268 [exp]	2.0	0.8815
AT4G35910			Adenine nucleotide alpha hydro...		Lus10042060 [exp]	6.5	0.8547
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Lus10038975 [exp]	6.9	0.8711
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	7.7	0.8789
AT1G70820			phosphoglucomutase, putative /...		Lus10020414 [exp]	12.7	0.8188
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	14.1	0.8697
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10043418 [exp]	17.9	0.8420
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	20.7	0.8560
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	20.8	0.8495
AT3G48200			unknown protein		Lus10039976 [exp]	23.8	0.8432

Compare expression of checked genes

Lus10039334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.