Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51895 929 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 825 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT3G15990 681 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 676 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT5G19600 646 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT4G08620 633 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G22150 617 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT1G78000 615 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G10180 546 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 528 / 3e-179 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006612 [exp] 1261 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10014706 [exp] 691 / 0 AT3G51895 804 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 659 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10035897 [exp] 650 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10041111 [exp] 647 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10025766 [exp] 646 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 645 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10036437 [exp] 645 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10029616 [exp] 640 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082700 [exp] 1022 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 999 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 956 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 950 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.005G167300 [exp] 684 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.010G111700 [exp] 679 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.006G158900 [exp] 671 / 0 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.006G156038 [exp] 667 / 0 AT5G19600 789 / 0.0 sulfate transporter 3;5 (.1) Potri.001G179400 [exp] 662 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.003G056200 [exp] 661 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10039364 pacid=23175613 polypeptide=Lus10039364 locus=Lus10039364.g ID=Lus10039364.BGIv1.0 annot-version=v1.0 ATGGGCACTACTACTGATTACGACCGGCGGCCACACCGCGTAGCCATCCCGCCGGCGAAACCGTTCCTCCAGACTCTCAAATCAAGCTTGAAGGAAACCC TTTTCCCCGACGACCCCTTCAGGGACATCAAGAAGCAGCAGACAGCTTCCAGGAAAATCGTTATGGCGCTTCAGTACTTCATCCCCATCCTAGAGTGGGG CCCTCGCTACACTCTCGACTTCTTCAAGGCTGATCTCNNNNNNNNNNNNNNNNNNNTTTCCACCCCCCCTATGGGCCCTACTACGGATTACGACCGGCGG CCGCACCGTGTGGCCATCCCGCCGGCAAAACCGTTTTTCCAGACTCTGAAATCAAGCCTGAAGGAAACCCTTTTCCCCGACGACCCCTTCAGGGACATCA AGAAGCAGCAGACAGCTTCCAGGAAAATCGTTATGGCGCTTCAGTACTTCATCCCCATCCTAGAGTGGGGCCCTCGCTACACTCTCGACTTCTTCAAGGC TGACCTCGTCGCCGGTATCACCATCGCTAGCTTGGCCGTCCCTCAGGGCATCAGCTACGCCGGCCTCGCTAGCCTCCCCGCCATTGTTGGACTCTACTCG AGCTTTGTGCCGCCACTGGTGTACGCGATGCTGGGGAGCTCGAGGGATGTGGCGGTTGGGACGGTGGCGGTGGCGTCGCTGCTGATGACAACGATGTTGG GGAAGGAAGTTAGTCCGGTGGAGAATCCTAAAGAATATTTCCAGTTAGCTATAACTGCCACCTTCGTTTCCGGCGTCTTGGAATCACTCCTTGGACTCCT CAGGCTCGGGTTTATCGTGGATTTCTTGTCGCATGCAACAATCGTGGGGTTCATGAGTGGAGCGGCCACGGTGGTATGTTTGCAACAACTAAAAGGAATA CTTGGATTGATTCACTTCACTCACGAGACCGATATGATTTCCGTTATGCATTCCATCTTTAGTCAGACACACCAGTGGAGATGGGAAAGTGGGATTCTAG GCTGTTGCTTTCTCTTCTTCCTCCTCCTCACTAAACACTTCAGCAAGAGAAAGTCTTACTTCTTTTGGATAAACGCGATGGCGCCACTGACATCTGTTGT TCTTGGAAGTGTTCTTGTCTATCTCACCCATGCCGAGAAACATGGCGTCCAAGTGATTGGGAACCTGAAGAAAGGACTGAATCCCCTGTCTGTATCCGAC TTGGCATTTGGGTCTCCTCATCTGATGGTAGCTGTTAAAACTGGCATCGTAACTGGAATTATTGCTCTTGCTGAGGGAGTAGCAGTTGGGAGGAGCTTTG CACAGTTCAAGAACTACCACATTGATGGCAACAAAGAAATGATTGCTTTTGGTACCATGAATATTGTTGGCTCCTTCACGTCTTGCTATCTAACCTCAGG TCCATTTTCGAGAACCGCGGTTAACTTCAATGCCGGATGCAAGACAGCAGTGTCGAACATAGTAATGGCAGTAGCAGTGATGATGACTCTGTTGTTCCTT ACGCCACTCTTCCACTACACTCCCATGGTGGTGCTGTCAGCTATCATCATTGCAGCCATGCTCGGCCTGATAGACTACGAGGCTGCATTCCACCTTTGGA AAGTCGACAAGTACGATTTTGCTGTATGCCTTGGTGCTTACATTGGTGTGGTTTTCGGCAGCGTGGAGATTGGTCTTGTCATTGCTGTTGCGGTTTCTCT AGTAAGGCTGCTTCTGTTTCTAGCAAGGCCAAAGACTTCATTACTTGGCAATATTCCAAACTCCATGATTTACAGAAGCATGGATCAATACCCCAATGCC GATGGTGTTCCTGGAGTGCTCATTCTTCAGATTGAAGCGCCTATTTACTTTGCCAATGCCAACTACTTGAGAGAAAGGATTTCAAGATGGATTTATGAAG AGGAAGACAAACTGAAATCTGCAGGAGGACCCAGTTTACAGTTCGTCATACTTGACATGACCTCAATCGGTAACATAGACACAAGTGGGATAAGCATGCT GGAAGAAGTGAAGAAGAATACAGACAGAAAAGGGTTGACGCTGCTACTGGCAAACCCACGGAGCGAGGTTATTAAGAAGCTAGACAAGTCCAAATTCATA AAAAGTATTGGTCAAGAATGGATATACCTGACTGTGGCAGAAGCTGTGGCAGCTTGCAACTTCATGCTGCACACATGCAACCCCAAACATGTTACGACCG AATCCAATGGACAAGACAACAATGTCTGA
AA sequence Show only first row Show all	>Lus10039364 pacid=23175613 polypeptide=Lus10039364 locus=Lus10039364.g ID=Lus10039364.BGIv1.0 annot-version=v1.0 MGTTTDYDRRPHRVAIPPAKPFLQTLKSSLKETLFPDDPFRDIKKQQTASRKIVMALQYFIPILEWGPRYTLDFFKADLXXXXXXXSTPPMGPTTDYDRR PHRVAIPPAKPFFQTLKSSLKETLFPDDPFRDIKKQQTASRKIVMALQYFIPILEWGPRYTLDFFKADLVAGITIASLAVPQGISYAGLASLPAIVGLYS SFVPPLVYAMLGSSRDVAVGTVAVASLLMTTMLGKEVSPVENPKEYFQLAITATFVSGVLESLLGLLRLGFIVDFLSHATIVGFMSGAATVVCLQQLKGI LGLIHFTHETDMISVMHSIFSQTHQWRWESGILGCCFLFFLLLTKHFSKRKSYFFWINAMAPLTSVVLGSVLVYLTHAEKHGVQVIGNLKKGLNPLSVSD LAFGSPHLMVAVKTGIVTGIIALAEGVAVGRSFAQFKNYHIDGNKEMIAFGTMNIVGSFTSCYLTSGPFSRTAVNFNAGCKTAVSNIVMAVAVMMTLLFL TPLFHYTPMVVLSAIIIAAMLGLIDYEAAFHLWKVDKYDFAVCLGAYIGVVFGSVEIGLVIAVAVSLVRLLLFLARPKTSLLGNIPNSMIYRSMDQYPNA DGVPGVLILQIEAPIYFANANYLRERISRWIYEEEDKLKSAGGPSLQFVILDMTSIGNIDTSGISMLEEVKKNTDRKGLTLLLANPRSEVIKKLDKSKFI KSIGQEWIYLTVAEAVAACNFMLHTCNPKHVTTESNGQDNNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10006612 [exp]	1.0	0.9726
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	1.4	0.9299
AT1G66830			Leucine-rich repeat protein ki...		Lus10017611 [exp]	2.4	0.9167
AT2G40460			Major facilitator superfamily ...		Lus10034206 [exp]	2.8	0.9037
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	3.2	0.9176
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10028752 [exp]	3.5	0.9214
					Lus10026092 [exp]	4.0	0.9183
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	4.6	0.9164
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	8.4	0.8893
AT5G47800			Phototropic-responsive NPH3 fa...		Lus10039099 [exp]	9.8	0.8575

Compare expression of checked genes

Lus10039364 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.