Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 551 / 2e-176 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 514 / 5e-159 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G07040 190 / 3e-49 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 179 / 8e-46 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 179 / 1e-45 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 179 / 1e-45 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G50950 175 / 2e-44 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58400 174 / 2e-44 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27220 168 / 2e-42 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 165 / 2e-41 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016316 [exp] 1140 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 1038 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 962 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 829 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10002737 [exp] 678 / 0 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 635 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 590 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 578 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 573 / 0 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029300 [exp] 1004 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 976 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 944 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 925 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 925 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 917 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 913 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 899 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 879 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.T126306 [exp] 866 / 0 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10039509 pacid=23165259 polypeptide=Lus10039509 locus=Lus10039509.g ID=Lus10039509.BGIv1.0 annot-version=v1.0 ATGGCTTCAAGTGAGTTTGCTGCCTTGATCAAGGCCCGAAAGCTTGATGCAGGACTGTTGAAGAGGTTGAATGTAGCGGGGGAAGCTATCAACCAGCTTA TTGACGATGCCGAGGAGAAGCATCTTACTGACGATGCCATAAGAAACTGGGTTGCTGAGCTGAAAGATGCTGCCTATGAAGTTGATGACTTTATCGATGA GCTCGGATATGAGGCTATTCAGGCTGAAGTTGAAGCTGCATCTCAGACTGCCACGGGGAAGGTGTTGAGCTTTTTCTCCTATCGTAATCCATTCAAGGAT GGAATTAACGGGAGGCTGAAGAAGCTCCTTGAGAGGCTTGATGGCCTAATAAAGCAGAATGACGTCCATAAGCTGAATGTGGATAGTGGGAACAGACCAT CGTCTTCAATAGCTCCTTCTACTTCTATTGCGCACGATGAATCTTGTGTTTATGGTAGGGAGGCTGATAAGGACGCCATTATGGATTTGCTGCTCTTGAA TGACCGAAACAGTGACGATTTGGGTGTTATTACGATTGTGGGAACTGGTGGTGTGGGTAAAACCACACTTGCTAAGCTGATACATGAGAATTCAAAGGTT CAAGAACACTTCCAAATCAGTGCTTGGGTTTGTGTCTCGGAAGACTTTGATGTCAACAAAATAACAAAGGATATTCTTGAGGAGCTCAGTGGGAAGGCTG CTGATAATCGTACTTTGAATCAGCTACAAATTGAGTTGAAAGGCAGATTGACACAAAAGAAGTTCTTGATTATTCTAGATGATGTGTGGAATGAGAGCGA TCATGATTGGGATCTGCTACAGACACCACTCAAGTACGGCGCAAAGGGAAGTAAGATTATTGCTACAACGCGGAATCTAAATGTTGCTTCAATCATGTCG ACCACTGACGCATATCATCTTAACCCATTAACAAATGATGATTGCTGGGTGTTATTCTCGAACTGTGCATCTGTGGATGGAAGTATAGATACACGCCCTG AGCTGGAAACTATTGGCAGAGAAATAGTAGGTAAATGTGAAGGCCTACCTTTGGCAACAAAGATATTAGGAGCTTTGCTACACTCTGAACAAGATGCTGA GATATGGAAAAAGATACTGAGTAGTAATTTATGGAATCTGGATGATAATATTCTTCCAGCTCTTATATTGAGCTATCACTATCTTCCATCGTATTTGAAA CAATGTTTTGCATACTGTGCAATTTTCCCCAAGGATTACAAGTTTCAAAAAGAAGAACTAGTGCTCTTATGGATGTCAGAAGGTTTCATAAGCCAGATGG AAGGTGAGAAGGAGATTGAGGAATTGGCTTGTGAGTATTTCGATCAGCTTGTAGCCAGATCCTTCTTTCATCAGTCAAGTGGATTGGCTTCTTACTTTAC AATGCATGGCCTAATTCATGATTTATCTGAGTATGTGTCTGGCGAATTTTGCTTCCAGTTAGATGGCAATGATTTATCAAAGATTACTAAACGGACCCGT CACTTGAGGTATGCAAGAACGAGTAAAGATGCATCTAGGAAAATTGAGGATATTTATAGAGCTCGAGTTTTGCGTACCTTCTTCTCCTCAAAGGCAATCT GGTGGAATGTTGATTATAAATCTATTGACAATGATGCAATTAATGGTCTCTTAAGCACACTTAGTAACTTACGTGTACTCTCCTTTTACGGGTACAATTT AGTTGAGTTGCCTAATTCAATAGGCAACCTAAAACATTTGCGGTATCTGAATCTCTCTCTGACTTGTGTGAAAGAGCTGCCTGCGATGATCTGCACCCTT TACAATTTACAAATTTTAATTATGCAATCTTGCAAGGAGCTTGAAGTACTGCCTGACTCAATCGGCAAGTTGAAGCAATTACAACATTTGGATCTGTGTC AAACAGCAATTGGAAGGTTGCCGGACTCTGTGGTACTGTTAACCAACCTGTATCATCTTGACCTTACAGAAACAAAACTGCAAGAGATGCCGTTGGAATT GGGTAAGTTGACCAAACTTCAATGCTTAACTGATTTTGTTGTGGGAAAGCGCAGTGGTGCCAGTATTAAAGAGTTGGAGGAGCTTCATCATCTTAGAGAA ACAATCCGTATTTGGAATCTTCAAAATGTTGTAGATTCAGCAGATACTTTTGGAGCTCTTCTGAAGAGAAAACAGCACCTTAAAAGGCTAGAGTTGAGAT GGCATGGAGATGCTGATGACTCAGCGCATGAAGTGATGCTAATGGAGAAGTTGCAACCATATCTTGAGTTGAACAGCTTGAAGATTGATGGTTATAGAGG AACAACATTTCCAGTGTGGGTTGGGGATCATGCATTCACACATATAATCTCCATGGAACTCATAGGATGTAAGAACTGCTACTTCTTGCCCTCGCTGGGA CAGTTGCCATCTCTGGAGAAACTATCTATCAAAGCATTTGACAGTATCCGAGCTGTGGGTTCGGAGTTTTGTGTGAGTGTGACATCCATGGAGAAGCCAT TTAGATCCCTCATAACTTTAGAGTTTGAAGACATGCCAGAATGGGAGGAGTGGACTCCTTTTGTGGAAGAAAATGGTGGAAGGTTTCCTCGTCTAGAGGA GCTTTGCTTGACTAATTGTCCGAAGCTGAAGCAGACACTGCCGAGCCGCCTTCCTTCCTTACAATTACTTAGGATCAGAGGATGCCAGCAGCTCCGCATT GCTTCGCTTCCAAGTAATTTTGTTGTTTTCAGAATGGATGTGAGGGACACGTTACGATCGGTGATTTTAGAGACATCAACAGCAGAGCTACATTCCATCC ATGTCAATGCATTTGGCTCCAAAGTTGCAGGTTCAGATGCAATGGAGCCAGTACGTAGCTTTTCTCCTACTTTAGAAGAAATTGATATTGAACAATGTCT CTCGGTCAACTGCTTCCCTCTTGAAATGTTCCCGGAATTGAAAACTCTTGCTATCAAGAACTGTCAAAATCTGGATTCCTTGTCGAGTCATGAGGAATGT TTGCAGGATTTGGTTTCTCTAAGTTCTCTGAAGATTTCAGAGTGTCCTAAATTTGTATCATTTCCCAAAGGAGGATTACCTGCACCAAATTTGACTAATC TTACTCTATTGAGTTGCTCAAATCTGAAATGTCTTCCAGAATGTATGGACTCCCGTTTTCCTTCCCTAGTGGAGTTGACAGTGGGTCACTGTCCTGAAAT CGAGTCTTTTCCTGAAGGTGGCTTGCCCTCAAAGTTGGAGACACTGAAGATCTGTGCATGTGATAAGCTTGTAGCTGGGCATTTGGAATGGGACTTGCAG ACACTTCCCTCTCTTCTGCACTTCAGTATGGATTCCAACAAAGGACTAGAATCTTTCCCTGATGAGACACTACTCCCATCCACTCTCACCACACTTAAGA TTTCGAGCATTAAAGATCTGAAATCTCTGGATGACAAAGGGATCCAACACTTGACTGCTATTAAAGAGTTGAAGATCAGTGCTTGCCCAAATTTGGAATC TTTTCCCATAGGGGATTTATTTCCTACTTTAGAGTCACTTGAGATTAATGACTGTGACAAACTTATAGCAGGTCGATCACAATGGAATTTACAGGCAATC ACATCTCTCTTGCACTTGAAATTATTTGAAAATGATGAAGTTGAATCATTCCCAGGGGTGATGCTGCTGCCTTCTTCTCTGATCTCTGTTGAGATCTGGG ATCTTTATAGTCTGAAGTCTTTGGAAGGTCTTCTTCAATTGGATTCTCTTACCAAACTTAAGATATCCCGTTGCCCAGAGCTCTATGCCATCCCAGAAGA GGGTCTTCCGTCCTCTCTGTCTTCGCTGACTATCCTCCGCTGTCCCTTTCTAGAACAAAGGTGCCAACAGGACAAAGGTGAAGATTGGAGCAAGATTTCT CACATCACCAACCTAGAAATTGGTTACTATAATATTTAA
AA sequence Show only first row Show all	>Lus10039509 pacid=23165259 polypeptide=Lus10039509 locus=Lus10039509.g ID=Lus10039509.BGIv1.0 annot-version=v1.0 MASSEFAALIKARKLDAGLLKRLNVAGEAINQLIDDAEEKHLTDDAIRNWVAELKDAAYEVDDFIDELGYEAIQAEVEAASQTATGKVLSFFSYRNPFKD GINGRLKKLLERLDGLIKQNDVHKLNVDSGNRPSSSIAPSTSIAHDESCVYGREADKDAIMDLLLLNDRNSDDLGVITIVGTGGVGKTTLAKLIHENSKV QEHFQISAWVCVSEDFDVNKITKDILEELSGKAADNRTLNQLQIELKGRLTQKKFLIILDDVWNESDHDWDLLQTPLKYGAKGSKIIATTRNLNVASIMS TTDAYHLNPLTNDDCWVLFSNCASVDGSIDTRPELETIGREIVGKCEGLPLATKILGALLHSEQDAEIWKKILSSNLWNLDDNILPALILSYHYLPSYLK QCFAYCAIFPKDYKFQKEELVLLWMSEGFISQMEGEKEIEELACEYFDQLVARSFFHQSSGLASYFTMHGLIHDLSEYVSGEFCFQLDGNDLSKITKRTR HLRYARTSKDASRKIEDIYRARVLRTFFSSKAIWWNVDYKSIDNDAINGLLSTLSNLRVLSFYGYNLVELPNSIGNLKHLRYLNLSLTCVKELPAMICTL YNLQILIMQSCKELEVLPDSIGKLKQLQHLDLCQTAIGRLPDSVVLLTNLYHLDLTETKLQEMPLELGKLTKLQCLTDFVVGKRSGASIKELEELHHLRE TIRIWNLQNVVDSADTFGALLKRKQHLKRLELRWHGDADDSAHEVMLMEKLQPYLELNSLKIDGYRGTTFPVWVGDHAFTHIISMELIGCKNCYFLPSLG QLPSLEKLSIKAFDSIRAVGSEFCVSVTSMEKPFRSLITLEFEDMPEWEEWTPFVEENGGRFPRLEELCLTNCPKLKQTLPSRLPSLQLLRIRGCQQLRI ASLPSNFVVFRMDVRDTLRSVILETSTAELHSIHVNAFGSKVAGSDAMEPVRSFSPTLEEIDIEQCLSVNCFPLEMFPELKTLAIKNCQNLDSLSSHEEC LQDLVSLSSLKISECPKFVSFPKGGLPAPNLTNLTLLSCSNLKCLPECMDSRFPSLVELTVGHCPEIESFPEGGLPSKLETLKICACDKLVAGHLEWDLQ TLPSLLHFSMDSNKGLESFPDETLLPSTLTTLKISSIKDLKSLDDKGIQHLTAIKELKISACPNLESFPIGDLFPTLESLEINDCDKLIAGRSQWNLQAI TSLLHLKLFENDEVESFPGVMLLPSSLISVEIWDLYSLKSLEGLLQLDSLTKLKISRCPELYAIPEEGLPSSLSSLTILRCPFLEQRCQQDKGEDWSKIS HITNLEIGYYNI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	0	1
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	3.5	0.8582
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	7.4	0.8237
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	7.5	0.8737
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	7.6	0.7947
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008945 [exp]	7.9	0.8491
AT3G24715			Protein kinase superfamily pro...		Lus10038159 [exp]	8.9	0.8301
					Lus10034709 [exp]	15.6	0.8259
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	17.3	0.8209
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10011919 [exp]	17.4	0.8109
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10041808 [exp]	23.1	0.8072

Compare expression of checked genes

Lus10039509 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.