Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 675 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 535 / 1e-168 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 210 / 5e-56 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 189 / 5e-49 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G58390 187 / 1e-48 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 188 / 2e-48 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G53350 185 / 1e-47 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 178 / 9e-46 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G58848 177 / 4e-45 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 177 / 4e-45 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 939 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 897 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 884 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 638 / 0 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 637 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 571 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 562 / 2e-177 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 358 / 1e-112 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 368 / 8e-109 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G029300 [exp] 1068 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 967 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 898 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.003G200500 [exp] 882 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 868 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 865 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 860 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 860 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 843 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 842 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10039540 pacid=23165370 polypeptide=Lus10039540 locus=Lus10039540.g ID=Lus10039540.BGIv1.0 annot-version=v1.0 ATGGCTGAACTTATGGCGGGAGGCTCGATCCTTGGGGCTTTCCTCCAAGTTCTGTTCGACAGGATAGCTTCTCGGGAAGTTCTTGATTTCTTCAGGGGCC AAAAGCTTACTGTTGGGTTACTCCAGAAGCTCAACACCATGCTTATATTTGTCAATGGAGTGCTGGACGATGCAGAGGAGAAGCAGATCACTAAACCCTC GGTCAGGCTATGGTTGGACGAACTTAAAGCTGCTGTCTACGAAGCTGATGACTTATTGGACGAGGTTGCTTATGAATCTCTAAGGTCTGAACTAGAAGTC CACTCGCCTATCAGTGTTCATCAGGTCAGGAACTTGTTTGTTTCGTTAAATCCCTTTAAGAGAGAATTAGAAGCTAAATTAGGAGATATCCTCGAGAGGC TTGAATACTTAGTGAATCAAAGGGATGGTCTTGGTCTTAGAGAAGGTGGTTTTGTTGGACGGAATGCTATAATGAAATTGCCCAGTACTTCTCTTGTGGA TGAATCTGGTGGTGTTTATGGTAGGGATGAGGACAGAGAAGCTATAATGAAGTTGCTGTTGGAGAATAATGGCAATGGTTTTGGGGTGATTCCAATTGTG GGTATGGGTGGTGTTGGCAAAACAACATTAGCTCAGCTTGTGTATAATGATACGAGAACGGAGGGTTGTTTTGATGTTAAAGCCTGGGTTTGTGTTTCAC AAGAATCCTCTGTGCCCCAGGTTACCAAGGATATCCTTGAGGAGGTTATGGGCGGACTTGGAGGAGGTTGTGATGGCAAAAGCTTGAATCAGCTTCAGTT GGAGCTGAAGGGGAGATTGAAGGGGAAGAAGTTTTTGATTGTCCTTGATGATGTCTGGAACGATAAGTATGTCGATTGGGATGTCTTGAGACGGCCTTTG ATGACCGGAGCACCTGGAAGTAAGGTCATCATAACATCACGTAATGCAAGTGTAGCATCGATTATGCAAACTGTGCCGGTCTATCATTTAAAAGGGTTGA GCAATGATGATGCCTGGTTTTTGTTTCTAAAGCATGCTTCGCATGGTGGCAGTGGCAGTTTGAGTCCGATCTTGGAGCCGATTGGTAAAGAAATAGCGAG CAAGTGTAGAGGGCTGCCTTTGGCTGCAAAGACACTTGGGGGTCTCATGCGTTCAAATAGAGATTTGATGGATTGGGAGAGAATATGTAAGAGCAACTTG TGGGATTTGTCTAATGATGAGATTCTTCCGGCTATTCGATTGAGTTACCATTACCTGCCATCGCATCTGAAAAGATGTTTTGCTTATTGTGCTATATTTC CCAAGGATTATGAGTTTGAGAAGGATGAATTGGTTTATCTGTGGATGGCTGAAGGTTTTATAGTGCAGCCAAGAGGAAATAAGCAGATGGATGAGTTAGG TGATGAGTACTTTCATGATCTTGTCTCGAGGTCTTTTTTCCAGCGATCAAGTGTGGATCCATTTACTTATGTCATGCATGATCTCATCAATGACTTGGCT AAACATGTGTCTGGGAATTTTTGCCTGAGATTGGAATGTGATGATCCATGTAAGGTGGATGGAAGAACTCGCCATTTGTCATATGCAAGAACTGAAAGTG ATCTTTCTCAGAAGCTTGAGAGTCTCCGCAAAGCCAAGCTTCTTCGTACTTTCTGGCTTCTAGAGTGGTCGCACTTTGTCAATGATGTTGCGTTTGATTT GTTGATGACACAAAAGCGACTTAGAGTGTTGTCACTGTCTCACTTCCGTACTCTGACCGAGTTGCCAGATTCGATAGGCCAATTGAAGCATTTAAGATAT CTGAATCTGTCAACCACATCAGTTGAGCGTTTGCCTGAAACTGTTTGTGCTCTTTACAATCTGCAGACATTGATCTTGCATCAGTGCAACCAACTTGTTC AGTTGCCAAACAACATAGGAAGCTTGTTCAACTTGCGTCATCTCGATATCAGAGGCACTAATTTACAGGAGATGCCCCTGCAGATGGATAAACTGACTAA GTTACAATTACTGACAGATTTCATCATAGGAAGAGGAAATGGATCTTGGATTAAAGTGCTGGGAGGACTTCAGAATCTTGGTGGACAACTTTGTCTTCGA AATCTTCATCACATAATGGAAGTACAAGATGCTTCAGAGGCCAATTTGAAAGATAAGAAGCGGCTTAAGCAGCTGGAGTTCATTTGGGATGGGGAGACAC ATGATTCAGTGCATGAAAGAACTGTACTTGACCAATTACAACCCCATACAAGTATCCAGTCCTTATCAATTGTTGGCTACAGAGGTACGAGGTTTCCACA TTGGGTTGGCAGTTCTGCTTTCTCAAGTATAACATCGCTGAAGCTCAGTGGAGGCCATCATTGCTCTACCATGCCACCTTTGGGGCAACTGGTTTCTCTA ATTGACCTCTCCGTCGCAGCATATGTTAGTGTTGAGACAGTTGGTCACGACTTCTATGGATCTTCCACAGCCAAATGGAAGCCATTTGGGTCCCTCAAAA CATTGAGTTTCGAAAGCATGTTGTCATGGCGTGACTGGATTCCATTTGACGGAGAAGCTTTCCCTCTTCTCAAAAAGCTTTACCTCGGAAATTGCCCGAA CTTGATGAAAGCTCTTCCTTGTAGTAACCTTCCTTCTTTAGAAGTTCTTGAGGTAGTAGGGTGTCCACAGCTTGAGGCAACATTTCCAAAAGCCCCAAAC ATCCTTAAAATGAGTATCAAAGACGATACTCGTGATGCACAGCTAGTGAAACTGCCTTCTAAGCAGCACTCTCTGTCAGTTGACAGGTTCACACATGTTG AGTCTCTACTAGAGGCAATGGAGCAAATGGGAGGGATCTCTTCGACAATGGAAAGAATCGAGATAAGAAACTGCGGATCATTAAGGAGCTTCCCCTTGGA GTTGTTTCCCAACTTAAGGGCTCTTATCATCACTAGATGTTCTAATCTTGGAACACTTTCAGCATCTGGGGTGAATAGTAGCAATTATCCTGGTCTTACT TGCTTGGAGATTAGGGACTGCCCAAAGTTAGTATCTTTGCTTCAAGGAATACTGCCTGCACCAACTTTGACAAGGCTTCTGTTAATGGGCTTCTCAGGTG TGGAATGTTTCCCTGAGGAAAGTTTGCTACCTTCTTCTCTTACCATTCTTAAGATCTGGGATTTTCCAGATCTAATAAATTTGGATTACAAGGGGCTTGG GAACCTTATAGCTCTAGAAGAATTGCAGATATGCAACTGCCCTAATCTCCAATGCTTGCCGGAAGGGCTTTCTTCGGCGCTTACTCACCTGTGCATTTCT TGGTGTCCTATGTTAGAGCAAAGATGTCAACCAGATGCTGGAGAAGATTGGCCCAAGATTTCTCATATACCTCAACTCGAGATCAATTTCCAGAAGGTCA CCCGTTCATCTGAGCCAAGTGCCTAG
AA sequence Show only first row Show all	>Lus10039540 pacid=23165370 polypeptide=Lus10039540 locus=Lus10039540.g ID=Lus10039540.BGIv1.0 annot-version=v1.0 MAELMAGGSILGAFLQVLFDRIASREVLDFFRGQKLTVGLLQKLNTMLIFVNGVLDDAEEKQITKPSVRLWLDELKAAVYEADDLLDEVAYESLRSELEV HSPISVHQVRNLFVSLNPFKRELEAKLGDILERLEYLVNQRDGLGLREGGFVGRNAIMKLPSTSLVDESGGVYGRDEDREAIMKLLLENNGNGFGVIPIV GMGGVGKTTLAQLVYNDTRTEGCFDVKAWVCVSQESSVPQVTKDILEEVMGGLGGGCDGKSLNQLQLELKGRLKGKKFLIVLDDVWNDKYVDWDVLRRPL MTGAPGSKVIITSRNASVASIMQTVPVYHLKGLSNDDAWFLFLKHASHGGSGSLSPILEPIGKEIASKCRGLPLAAKTLGGLMRSNRDLMDWERICKSNL WDLSNDEILPAIRLSYHYLPSHLKRCFAYCAIFPKDYEFEKDELVYLWMAEGFIVQPRGNKQMDELGDEYFHDLVSRSFFQRSSVDPFTYVMHDLINDLA KHVSGNFCLRLECDDPCKVDGRTRHLSYARTESDLSQKLESLRKAKLLRTFWLLEWSHFVNDVAFDLLMTQKRLRVLSLSHFRTLTELPDSIGQLKHLRY LNLSTTSVERLPETVCALYNLQTLILHQCNQLVQLPNNIGSLFNLRHLDIRGTNLQEMPLQMDKLTKLQLLTDFIIGRGNGSWIKVLGGLQNLGGQLCLR NLHHIMEVQDASEANLKDKKRLKQLEFIWDGETHDSVHERTVLDQLQPHTSIQSLSIVGYRGTRFPHWVGSSAFSSITSLKLSGGHHCSTMPPLGQLVSL IDLSVAAYVSVETVGHDFYGSSTAKWKPFGSLKTLSFESMLSWRDWIPFDGEAFPLLKKLYLGNCPNLMKALPCSNLPSLEVLEVVGCPQLEATFPKAPN ILKMSIKDDTRDAQLVKLPSKQHSLSVDRFTHVESLLEAMEQMGGISSTMERIEIRNCGSLRSFPLELFPNLRALIITRCSNLGTLSASGVNSSNYPGLT CLEIRDCPKLVSLLQGILPAPTLTRLLLMGFSGVECFPEESLLPSSLTILKIWDFPDLINLDYKGLGNLIALEELQICNCPNLQCLPEGLSSALTHLCIS WCPMLEQRCQPDAGEDWPKISHIPQLEINFQKVTRSSEPSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10039540 [exp]	0	1
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	2.8	0.8995
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	3.2	0.8425
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	3.7	0.8621
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039926 [exp]	4.9	0.8576
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	6.5	0.8414
AT5G41950			Tetratricopeptide repeat (TPR)...		Lus10018184 [exp]	8.5	0.8337
AT5G36930			Disease resistance protein (TI...		Lus10001375 [exp]	8.8	0.7992
AT1G12530			unknown protein		Lus10007047 [exp]	14.2	0.7967
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10027999 [exp]	14.4	0.7559
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	15.1	0.8011

Compare expression of checked genes

Lus10039540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.