Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 132 / 1e-34 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 81 / 6e-17 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G48620 51 / 3e-07 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 50 / 7e-07 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G53350 49 / 2e-06 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 49 / 3e-06 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58400 45 / 3e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58410 44 / 8e-05 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G50950 43 / 0.0002 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59780 41 / 0.0006 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 368 / 1e-118 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 169 / 1e-47 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 157 / 3e-43 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 140 / 2e-37 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 136 / 4e-37 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 134 / 2e-35 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 94 / 2e-21 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 93 / 5e-21 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 85 / 2e-18 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G379700 [exp] 174 / 7e-50 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 162 / 3e-45 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 160 / 1e-44 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 159 / 3e-44 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 151 / 3e-41 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 150 / 4e-41 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 145 / 2e-39 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 145 / 2e-39 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 139 / 3e-37 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 137 / 2e-36 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10039549 pacid=23165090 polypeptide=Lus10039549 locus=Lus10039549.g ID=Lus10039549.BGIv1.0 annot-version=v1.0 ATGACAAATTGCTCAAGAAGCTGCTCGCTCACTCTTCTTAATTGCGTCAACGGACTGCTCGACGACGCGGAGGAGAAGCAAATCACCAAACCCTCGGTGG AGAAGTGGCTCAACAACCTCAAGGATGCCGTCTACGAAGCGGACGACTTGTTGGATGGAATTACTTACGAAGCCCTTAAATCGGAGGCTGAATCCGGAGC TTTCATCACAAACCCTAGAAAGGTATGGAACCATCTCTTAACTTCTTCTTACAACCCATTTCGCAAGAGTGTTGACGACAAGTTGAAAGATGTTCTTGAG GGACTCCAAGACATAGTTAACCAGAAGGATGTCCTTGGTTTGAGGGATGGTGTTAATGGTGGTGGTGGAAAGAGAGACTCATTTCATAGGATGCCTTCAA CTTCTGTTGTAGAAGAATGTGATGTCTATGGCAGGGATGTTGATAAGCAAGCCATTGTTCAGTGGCTGCTGTCTGATGATGATCCAACGGGTAATAATGA TTTAGGGGTGATTTTGATTGTTGGGATGGGTGGAATTGGTAAGACCACTCCGGATCAACTCGTGTACAATGTTGAATTGGTTAGGGATCGATTTGGTCTT CAGGCTTGGGTTTGTGTCTCAGAAGAGTATGATGTGTTTAGGCTTACCAAAGATGTGATTGAGGAAGTGACTCTGCGACCTTGTGACTTAAAGTCCCTTA ACCGGCTACAGCTTGAGTTGGAAAGGGTTTTGAAGGGGCGTAGGTTTCTACTTGTTCTTGATGATGTTTGGACTGATGATGTTGAAACATAG
AA sequence Show only first row Show all	>Lus10039549 pacid=23165090 polypeptide=Lus10039549 locus=Lus10039549.g ID=Lus10039549.BGIv1.0 annot-version=v1.0 MTNCSRSCSLTLLNCVNGLLDDAEEKQITKPSVEKWLNNLKDAVYEADDLLDGITYEALKSEAESGAFITNPRKVWNHLLTSSYNPFRKSVDDKLKDVLE GLQDIVNQKDVLGLRDGVNGGGGKRDSFHRMPSTSVVEECDVYGRDVDKQAIVQWLLSDDDPTGNNDLGVILIVGMGGIGKTTPDQLVYNVELVRDRFGL QAWVCVSEEYDVFRLTKDVIEEVTLRPCDLKSLNRLQLELERVLKGRRFLLVLDDVWTDDVET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10039549 [exp]	0	1
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	2.4	0.8815
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	8.1	0.8492
AT3G45830			unknown protein		Lus10018121 [exp]	10.0	0.8558
AT3G51050			FG-GAP repeat-containing prote...		Lus10014275 [exp]	11.4	0.8352
AT3G09660		MCM8	minichromosome maintenance 8 (...		Lus10023169 [exp]	13.0	0.8087
AT4G21100		DDB1B	damaged DNA binding protein 1B...		Lus10020922 [exp]	13.2	0.8322
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10024394 [exp]	14.5	0.8339
AT5G22450			unknown protein		Lus10004878 [exp]	16.9	0.8368
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	18.3	0.8125
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10037517 [exp]	18.7	0.8260

Compare expression of checked genes

Lus10039549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.