Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 573 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT2G04890 212 / 1e-63 GRAS SCL21 SCARECROW-like 21 (.1) AT5G48150 212 / 7e-63 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 213 / 2e-62 GRAS SCL5 scarecrow-like 5 (.1) AT4G17230 185 / 2e-52 GRAS SCL13 SCARECROW-like 13 (.1) AT3G54220 146 / 7e-38 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT4G37650 143 / 4e-37 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT1G66350 133 / 1e-33 GRAS RGL1 RGA-like 1 (.1) AT5G52510 131 / 1e-32 GRAS SCL8 SCARECROW-like 8 (.1) AT5G17490 129 / 2e-32 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024177 [exp] 940 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10019773 [exp] 740 / 0 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 576 / 0 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 550 / 0 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10034374 [exp] 273 / 7e-87 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10005078 [exp] 262 / 1e-82 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10016596 [exp] 233 / 2e-70 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 206 / 4e-60 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017758 [exp] 195 / 9e-56 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202100 [exp] 692 / 0 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.001G023500 [exp] 684 / 0 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 602 / 0 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 303 / 8e-99 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.001G361700 [exp] 219 / 2e-65 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.005G186500 [exp] 219 / 7e-65 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 213 / 1e-62 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 213 / 1e-62 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 206 / 1e-59 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.010G110700 [exp] 205 / 2e-59 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10039562 pacid=23165057 polypeptide=Lus10039562 locus=Lus10039562.g ID=Lus10039562.BGIv1.0 annot-version=v1.0 ATGGCAGGAAATCTTCAAGAAGACAGATCATCCGTTACTTCATCTCCCCATCAGTTGTTTTCCTGGATGTCACTGTCTCCGGGGCTCGGATCGCCATTCC CATGGCTGAGGGACCTTCAACCGGAAGAGAGAGGGCTTTGCCTCATTCAGCTCCTTCATGCTTGTGCCAATCAAGTAGCTGCTGGCAGTGTTGAGAATGC AAACATCGGTCTCGGCCATATATCTCACCTTGCCTCTCCTGAAGGTGATACTATGCAGAGAATTGCTGCTTACTTCACCGAAGCGCTAGCTGACCGGATG CTTAAAATCTGGCCTGGTTTGTACAACGCTCTCAATTCAACGAAAACCCGCTCAGCATCTGAAGAGATCCTTGTTCAGAAGCTGTTCTTTGAGCTTTGCC CCTTTCTGAAGCTATCATATGTTATAACTAACCAGGCTATTGTAGAAGCTATGGAAGGTGAGAAAATGATACATATTATTGATTTGAACGCATCTGAGCC TGCTCAGTGGATCGAGCTCCTCCGTACATTAAGTGCACGCCCTGAAGGTCCACCCCATTTGAGAATCACCGGTATACACGAACAGAAAGAAGTGTTGGAT CAAATGGGAGTTCGGTTGGTTGAAGAAGCTGAGAAGCTGGACATCCCATTTCAGTTTAACTCAATAGTGAGCACGCTAGAGACTCTTGATCTCGAACGAC TGCGTGTAAAGACCGGAGAAGCGCTTGCAGTCAGTTCTGTGCTTCAGCTGCACAATTATTTGGCGACAGACGAGGAAGTTGTTACAAGAGGTTTCCCTTC GGCCTCCAAGAGTGCTAGCCATAATAACCACATCCAGAAGTTGATGCAGATGAAACAAAACCAGAAGACATTAGGTGAGTGGCTCGAGAATGATATGGTT CAGTACCATAGTTCAAGTCCTGATTCAGCATTATCTCCTCTGTCCCTGGCTCCTTCCCCAAACATGGGGACCTTTCTGAGTTCACTTTGGGGTCTTTCAC CCAAAATTATGGTGGTAACCGAGCAGGAGTCGGACCACAATGGCGATTCTTTAACAGATAGGGTGTCTGAGGCTATGAACTTCTACGCCGCGCTCTTTGA TTGCTTAGAGTCTTCTACCGATCCTAGAGCTTCGGTGGAGAGGCAAAAGGTGGAGAAGATGCTGTTGGGGAAGGAAATCAAAAATATAATTGCTTGTGAA GGTATTGAGAGAAAGGAAAGACACGAGAAGTTAGAGAAATGGATTATGCGACTGGAGTTAGCTGGGTTTGGAAGAGTTCCTTTGAGTTATGATGGAATGT GGCAAGCAAATAGATTGCTGCAGAGTTACAACTATGGTGGGTATAAGATCAAAGACAAGAATGGCTGCTTGCTCATCTGCTGGCACGACAGACCTCTTTA CTCCATCTCAGCTTGGAGACACAGGAGGTAA
AA sequence Show only first row Show all	>Lus10039562 pacid=23165057 polypeptide=Lus10039562 locus=Lus10039562.g ID=Lus10039562.BGIv1.0 annot-version=v1.0 MAGNLQEDRSSVTSSPHQLFSWMSLSPGLGSPFPWLRDLQPEERGLCLIQLLHACANQVAAGSVENANIGLGHISHLASPEGDTMQRIAAYFTEALADRM LKIWPGLYNALNSTKTRSASEEILVQKLFFELCPFLKLSYVITNQAIVEAMEGEKMIHIIDLNASEPAQWIELLRTLSARPEGPPHLRITGIHEQKEVLD QMGVRLVEEAEKLDIPFQFNSIVSTLETLDLERLRVKTGEALAVSSVLQLHNYLATDEEVVTRGFPSASKSASHNNHIQKLMQMKQNQKTLGEWLENDMV QYHSSSPDSALSPLSLAPSPNMGTFLSSLWGLSPKIMVVTEQESDHNGDSLTDRVSEAMNFYAALFDCLESSTDPRASVERQKVEKMLLGKEIKNIIACE GIERKERHEKLEKWIMRLELAGFGRVPLSYDGMWQANRLLQSYNYGGYKIKDKNGCLLICWHDRPLYSISAWRHRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10039562 [exp]	0	1
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10024177 [exp]	1.0	0.9500
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	2.8	0.8971
					Lus10036759 [exp]	3.7	0.8597
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	3.9	0.8792
AT1G77370			Glutaredoxin family protein (....		Lus10028355 [exp]	5.3	0.8720
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	5.9	0.8675
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	6.3	0.8569
AT3G60600		(AT)VAP, (AT)VA...	VAMP/SYNAPTOBREVIN-ASSOCIATED ...		Lus10028937 [exp]	8.1	0.8470
AT4G36750			Quinone reductase family prote...		Lus10041718 [exp]	8.7	0.8371
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Lus10042637 [exp]	9.8	0.8245

Compare expression of checked genes

Lus10039562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.