Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 382 / 2e-127 BAT1 bidirectional amino acid transporter 1 (.1.2) AT2G34960 50 / 4e-06 CAT5 cationic amino acid transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028561 [exp] 779 / 0 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2) Lus10034628 [exp] 429 / 2e-143 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10035260 [exp] 350 / 4e-116 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10029533 [exp] 273 / 1e-86 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100700 [exp] 932 / 0 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2) Potri.002G078100 [exp] 794 / 0 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 572 / 0 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 505 / 2e-176 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2) Potri.010G119100 [exp] 439 / 1e-149 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.008G125100 [exp] 429 / 9e-146 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10039616 pacid=23165024 polypeptide=Lus10039616 locus=Lus10039616.g ID=Lus10039616.BGIv1.0 annot-version=v1.0 ATGGAGCACCACCAAGCTGCAGAAAGCTGGGAGATTGAAGAAATGGATTCTGGTGAGAAGAGGCTCAACGAGTTGGGTTACAAGCAAGAGCTCAGAAGAC AAATGACTTTGTTCAAAACTCTTGCCATATCATTTTCAACCATGACTCTCTTTACTGGGATCACACCCTTGTATGGTTCAAGCCTTATGTATGCAGGCCC TGCAACTCTGGTGTGGGGATGGGTTGTTGTCTCCTTCTTCACCTGGTTTGTTGGCATTGCCATGGCTGAGATTTGCTCCTCTTTTCCGACTACTGGTTCT CTTTATTTCTGGGCAGCCCATTTAGCTGGTCCCAAATGGGGACCTTTTGCATCCTGGTGTTGCGCCTGGCTTGAGACCATTGGACTCGTTGCTGGCATAG GTACTCAGGCATATGCAGGGTCACAAACACTGCAGAGTATCATATTATTATGCACGGGAACGAACAAAAATGGAGGATATTTTGCTCCCAAATGGCTGTT TTTATGCATGTATGTAGGACTCACTCTTATATGGGCTTTTCTCAACACGTTTGCCTTGGAAGTCATTGCTTTCATTGACATCATCTCCATATGGTGGCAG GTAATTGGAGGGTTGGTAATTGTTATACTGCTACCACTGGTGGCAACGACCACGCAATCTGCTTCCTATGTGTTTACTCATTTCGAAGTCGGTTCCGAAA CTACAGGCGTATCAAGCAAACCTTATGCGGTCATTTTGTCTTTCCTTGTTAGTCAATATTCTCTTTACGGATACGATGCAGCAGCCCATCTGACAGAAGA AACTAAAGGTGCTGACAAAAATGGTCCCATTGCAATCCTGTCCAGCATTGGCATTATATCTGTATTTGGATGGGCTTATATCTTGGCCCTCACTTTCAGC ATCCAGGATTTCAGTTACTTGTACGATCCGAGTAATGAGACTGCAGGAGCGTTTGTACCGGCGCAAATACTATACGATGCATTCCATGGAAGGTATCAGA ACTCTGCAGGAGCGATTGTGCTGTTGTTTGTGATATGGGGTTCATTCTTCTTTGGTGGCCTCTCTATAACTACTAGTGCAGCTAGAGTGGTTTATGCATT ATCAAGAGACAAAGGCATTCCATTCTCATCGGTGTGGCGTAAAATTCACCCGAAGCATAAAGTTCCCTCGAACGCGGTGTGGCTTTGCGCTGCCATATGC ATTCTCCTGGGACTCCCAATACTGAAAGTGAACGTTGTGTTCACAGCCATAACTTCTATATGCACAATTGGATGGGTTGGAGGATATGCAGTACCAATAT TTGCAAGAATGGTTATGGATGAGAAGAACTTCAAAGCAGGTCCATTTTACTTGGGGAAAGCTAGAAGGCCGGTTTGCTTCGTCGCATTTATGTGGATTTG CTACACCTGCTGTGTGTTTCTGCTGCCAACTTTGTACCCGATTACTTGGGATACTTTCAACTATGCTCCTGTGGCTTTAGGAATTGGGTTGGGTTTGATA TTGCTGTGGTGGATGTTGGATGCTAGGAAATGGTTCAAAGGACCTGTCAGGAATATTGATGCTCCAAATGGTCATAAGGTTTGA
AA sequence Show only first row Show all	>Lus10039616 pacid=23165024 polypeptide=Lus10039616 locus=Lus10039616.g ID=Lus10039616.BGIv1.0 annot-version=v1.0 MEHHQAAESWEIEEMDSGEKRLNELGYKQELRRQMTLFKTLAISFSTMTLFTGITPLYGSSLMYAGPATLVWGWVVVSFFTWFVGIAMAEICSSFPTTGS LYFWAAHLAGPKWGPFASWCCAWLETIGLVAGIGTQAYAGSQTLQSIILLCTGTNKNGGYFAPKWLFLCMYVGLTLIWAFLNTFALEVIAFIDIISIWWQ VIGGLVIVILLPLVATTTQSASYVFTHFEVGSETTGVSSKPYAVILSFLVSQYSLYGYDAAAHLTEETKGADKNGPIAILSSIGIISVFGWAYILALTFS IQDFSYLYDPSNETAGAFVPAQILYDAFHGRYQNSAGAIVLLFVIWGSFFFGGLSITTSAARVVYALSRDKGIPFSSVWRKIHPKHKVPSNAVWLCAAIC ILLGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMDEKNFKAGPFYLGKARRPVCFVAFMWICYTCCVFLLPTLYPITWDTFNYAPVALGIGLGLI LLWWMLDARKWFKGPVRNIDAPNGHKV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10039616 [exp]	0	1
AT5G09680		RLF	reduced lateral root formation...		Lus10039342 [exp]	3.0	0.9430
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	7.9	0.9400
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10041148 [exp]	9.2	0.9230
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	11.3	0.9213
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10008392 [exp]	14.0	0.9269
AT5G62150			peptidoglycan-binding LysM dom...		Lus10015011 [exp]	21.3	0.9372
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10010700 [exp]	22.8	0.8892
AT1G29760			Putative adipose-regulatory pr...		Lus10033273 [exp]	23.4	0.9123
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	24.4	0.9134
AT2G48020			Major facilitator superfamily ...		Lus10027975 [exp]	25.4	0.9116

Compare expression of checked genes

Lus10039616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.