Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37750 204 / 2e-57 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) AT1G72570 184 / 2e-51 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G51190 176 / 4e-47 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 174 / 1e-46 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT5G17430 173 / 4e-46 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT5G57390 171 / 2e-45 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT5G10510 169 / 7e-45 AP2_ERF PLT3, AIL6 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) AT5G65510 161 / 1e-42 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT3G54320 122 / 2e-29 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT2G41710 117 / 5e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011730 [exp] 522 / 0 AT4G37750 248 / 4e-77 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10007719 [exp] 223 / 6e-64 AT4G37750 429 / 1e-144 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10018655 [exp] 220 / 5e-63 AT4G37750 430 / 9e-145 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10037670 [exp] 187 / 6e-53 AT1G72570 355 / 1e-120 Integrase-type DNA-binding superfamily protein (.1) Lus10031831 [exp] 177 / 2e-48 AT3G20840 580 / 0.0 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) Lus10011731 [exp] 170 / 2e-48 AT4G37750 177 / 3e-52 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Lus10031260 [exp] 174 / 1e-46 AT1G51190 667 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Lus10012728 [exp] 169 / 3e-45 AT5G10510 495 / 1e-170 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3) Lus10002657 [exp] 155 / 2e-40 AT5G10510 467 / 5e-160 PLETHORA 3, AINTEGUMENTA-like 6 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012200 [exp] 264 / 2e-78 AT4G37750 405 / 8e-134 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.007G007400 [exp] 256 / 2e-75 AT4G37750 412 / 9e-137 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.002G114800 [exp] 250 / 3e-73 AT4G37750 459 / 5e-155 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.005G148400 [exp] 248 / 9e-73 AT4G37750 399 / 7e-132 DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1) Potri.001G169500 [exp] 188 / 1e-51 AT1G72570 389 / 2e-131 Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 177 / 1e-47 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G205700 [exp] 176 / 1e-47 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.008G076400 [exp] 177 / 6e-47 AT5G17430 405 / 4e-133 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.010G181000 [exp] 176 / 2e-46 AT5G17430 399 / 2e-130 BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) Potri.018G091600 [exp] 174 / 2e-46 AT5G57390 422 / 9e-142 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10039650 pacid=23165066 polypeptide=Lus10039650 locus=Lus10039650.g ID=Lus10039650.BGIv1.0 annot-version=v1.0 ATGAAGTCCATGAACAATAATGATGAAAACAACAACAACAACAACATCAACATCAACAACAACAACTGGTTAGGATTCTCTCTTACTCCTGATCATCACC ACCATCATTTCAGAATGGCAGATGTAATTCCTACTACTACCTCTACAACTACAAGTGCTGCTGCTAGTATGCCCTCAAGTTTCTACAATCTTACCAGCAG CTATGCCACTAATTCCTCCTCCCCTTCTTCTTACTATGTTCATCCTCAAAATGGCGGTGCTTCCTTCTTCTGTTCCCAAATGTTGCCACTTAAATCTGAT GGTTCCCTCTGTATCATGCAAGCTCTCACCACCTCACACCCTTCTCATGATTTCTTTGGTGCCCATCATCATCATCACTATGAAAGCAACGAAAGAGAAT CTATGGCTCTTAGCTTAGACAACAACACTAGCAATAACGACATGATGTACCATATACATCATCAGCATCAGCTTCAGCAGCAATTCTACCATGCTTCCAG TTTCAATCACAATGAAGCAGCAGCCAACAAAGAGTTTCAACAGATTGAGGGTGATGATGATGATGCTGCCATTGTCAAGAGTTGGATTTCAAGGAACTAT GGGATGGTGGAGCAGCAGAGTAACAATAATAATGCGAATGAAAATGAATCAGCAGCTGGTGGTTGTGGCTCTATGAACGCAGCAATGGTAGCATATGGAG ATTTGCAGTCATTAAGCTTGTCAATGAGCCCTGGCTCTCAGTCAAGCTGTGTAAGTAGCGTTTCCCAAATCTCCACCCCTCCAGCAGAATGTGGAGTTAT GGTGGTGGATAACAAGAAACGAGGGTGTGAGAAGGTGGATCAGAAGAAGCAGATTGTTCATAGGAAGTCCATCGATACTTTTGGCCAAAGAACCTCTCAG TATAGAGGTGTTACCAGGCATAGGTGGACTGGGAGATATGAAGCACATTTGTGGGATAACAGCTGCAAGAAAGAAGGCCAGAGCAGAAAGGGAAGACAAG GTGGATATGACATGGAAGAGAAAGCTGCTAGATCTTACGATCTAGCTGCTCTCAAGTATTGGGGAGCCTCAACTCATATCAACTTCCCTTTGGAGAACTA CCACAAGGTTATCTATCACAATGAGCTTGATGAAATGAAGAACATGAGCAGACAGGAATATGTCGCTCATTTGAGAAGGCAAGAACTCCCCTTACCCAAC ATCATATCAGTTGTCCATTTGAGAATATTTATTTCTAAACTTGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTGCTCTCATCTTCTCACCATAATGAACCGTCTGATTGGAAGATGGTGCTTTACCACCA CCAATATCAGAACCAGTCATCTGATCACTATAATCAGCAGGAATGCCTGATTGCCACTGACAACATCATCTCTGTTGCTCATAATCAGGAGGTGGAGGAA CCGGGGGGTAAGATTCAGGTGTCAAATGCATCTTCGCTAGTGACAAGTTTGAATAGTTCGAGGGAAGCAAGCCCTCACCCCTCAGCAGCTGCTGCAAACA GCTTGCCAATGCTGTTTGGAATGGTTCCATCATCATCATCATCATCATCATCAGCCAAGTTGTTGTTTGGTGATCATAGTAGTAATTCAGCTAACACCTC ATCTTCATGGGTTCCTTCTCCAGCCGGCCAGTTAAGGACTGCTGCAATTCCTCTGCCTCATATGCCAGTTTTTGCTGCTTGGACTGATGGCTAG
AA sequence Show only first row Show all	>Lus10039650 pacid=23165066 polypeptide=Lus10039650 locus=Lus10039650.g ID=Lus10039650.BGIv1.0 annot-version=v1.0 MKSMNNNDENNNNNNININNNNWLGFSLTPDHHHHHFRMADVIPTTTSTTTSAAASMPSSFYNLTSSYATNSSSPSSYYVHPQNGGASFFCSQMLPLKSD GSLCIMQALTTSHPSHDFFGAHHHHHYESNERESMALSLDNNTSNNDMMYHIHHQHQLQQQFYHASSFNHNEAAANKEFQQIEGDDDDAAIVKSWISRNY GMVEQQSNNNNANENESAAGGCGSMNAAMVAYGDLQSLSLSMSPGSQSSCVSSVSQISTPPAECGVMVVDNKKRGCEKVDQKKQIVHRKSIDTFGQRTSQ YRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARSYDLAALKYWGASTHINFPLENYHKVIYHNELDEMKNMSRQEYVAHLRRQELPLPN IISVVHLRIFISKLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLSSSHHNEPSDWKMVLYHHQYQNQSSDHYNQQECLIATDNIISVAHNQEVEE PGGKIQVSNASSLVTSLNSSREASPHPSAAAANSLPMLFGMVPSSSSSSSSAKLLFGDHSSNSANTSSSWVPSPAGQLRTAAIPLPHMPVFAAWTDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10039650 [exp]	0	1
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Lus10011730 [exp]	1.0	0.9618
AT1G67040			unknown protein		Lus10017607 [exp]	4.5	0.9375
AT5G62960			unknown protein		Lus10002386 [exp]	8.0	0.8928
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	9.3	0.8548
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	9.5	0.9364
AT3G13275			unknown protein		Lus10020466 [exp]	10.3	0.8793
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10018518 [exp]	11.0	0.9336
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	13.2	0.9323
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	14.7	0.9335
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	16.3	0.9296

Compare expression of checked genes

Lus10039650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.