Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49950 343 / 8e-115 GRAS GRAS family transcription factor (.1) AT4G37650 181 / 6e-51 GRAS SGR7, SHR SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) AT5G48150 153 / 4e-41 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G21450 149 / 7e-39 GRAS SCL1 SCARECROW-like 1 (.1) AT5G67411 139 / 1e-38 GRAS GRAS family transcription factor (.1) AT2G04890 141 / 3e-37 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 142 / 1e-36 GRAS SCL5 scarecrow-like 5 (.1) AT3G03450 137 / 7e-35 GRAS RGL2 RGA-like 2 (.1) AT5G17490 130 / 8e-33 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G50420 120 / 1e-29 GRAS SCL-3, SCL3 scarecrow-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018498 [exp] 834 / 0 AT3G49950 347 / 3e-116 GRAS family transcription factor (.1) Lus10014852 [exp] 354 / 3e-118 AT3G49950 504 / 3e-178 GRAS family transcription factor (.1) Lus10011076 [exp] 344 / 2e-114 AT3G49950 502 / 2e-177 GRAS family transcription factor (.1) Lus10012089 [exp] 162 / 2e-44 AT4G37650 483 / 2e-167 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10025200 [exp] 162 / 2e-44 AT4G37650 484 / 8e-169 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10019281 [exp] 158 / 1e-42 AT4G37650 509 / 2e-177 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Lus10042776 [exp] 158 / 2e-42 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 158 / 3e-42 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10011542 [exp] 158 / 4e-42 AT4G37650 499 / 3e-172 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119000 [exp] 620 / 0 AT3G49950 369 / 7e-125 GRAS family transcription factor (.1) Potri.017G041500 [exp] 617 / 0 AT3G49950 370 / 2e-125 GRAS family transcription factor (.1) Potri.007G053500 [exp] 381 / 7e-129 AT3G49950 524 / 0.0 GRAS family transcription factor (.1) Potri.005G145600 [exp] 377 / 4e-127 AT3G49950 521 / 0.0 GRAS family transcription factor (.1) Potri.017G019900 [exp] 187 / 5e-54 AT4G37650 405 / 1e-137 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G132000 [exp] 181 / 8e-52 AT4G37650 410 / 4e-140 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.007G063300 [exp] 182 / 1e-51 AT4G37650 576 / 0.0 SHORT ROOT, SHOOT GRAVITROPISM 7, GRAS family transcription factor (.1) Potri.005G186500 [exp] 167 / 2e-45 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 159 / 9e-43 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.014G164400 [exp] 146 / 3e-38 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10039709 pacid=23165116 polypeptide=Lus10039709 locus=Lus10039709.g ID=Lus10039709.BGIv1.0 annot-version=v1.0 ATGAAAACCGAGTTTAGAGCAAACCCTTCATCCATCTCCCTCCAAACCCCTAACAAGAACCTCTTCACTAGCCCTACTCCTCCCCAACCTTCCCCACCGC CCTCCGCCGGAATCTCGGGGGCACTCAACGGGTGCAGCTTGGGCAGCCTCGACGGCGCGTGCATAGAGAAGCTCCTCCTCCACTGCGCAAGTGCCTTGGA GGGAAAGGAATGGACGCTTGCTCAGCAAGTCATGTGGGTCCTCAACAACGTTGCTTCACTGAGTGGTGACCCTAACCAACGGCTCACTTCATGGTTCCTG CGTGCCCTCATTTTGCGGGCCGCGAAGGTGTGTCCCACAGCCATGCACCACTTCGACAGCGGTGGTGGTGGCGGTGGGGGAGGAAGCTCATCTGCCTCTT ATGGAAGCAGGAGGAGGAAGATGACTGTCACTGAGCTGGCCGGGTACGTTGACTTGATCCCTTGGCATACTTTCGGGTTTTGTGCTTCGAATGGTGCCGT GTTGAAGGCTATCCAAGGTTGTTCTAAAGTCCATGTGCTGGACTTTAGCGTCACCCACTGCGTGCAGTGGCCGACGCTCATCGATGCGCTGGCTAAGCGT CCTGAGGGACCGCCGTCGTTGAGGCTCACGGTTCCGTCGATCAGGCCCTCTGTCCCGCCCTTACTCAACGTGTCGTGTGAAGAGGTGGGGTTGAGGTTGA GCAATTTCGCAAAATTTCGAGATGTTGAGTTCGAGTTCAATATCATCAATGGGAGTTTTGATCCTTTGGCATCTTGTATCAAGTCGAGTTCAGATTACTT TCATCACTACTTCGAGTCGTTGTTGACCAGTTTGACCGATCCTGGTCAACTATCCTCCCTTCTTAGGGAGGACGAGGTCATAGTAGTAAACTGTCAGAAC TGGCTCCGTTACCTATCCGACGACGAATCATCTGCCATCGGTTCCTTGAGGGACGAATTTCTACGCACGATCTTAACACTAAATCCAGCCATCGTGGTAG TGGTTGACGAGGATGCGGACCTAAACATATCGAGCCTAACCACGAGGATCACAAACTGTTTCAACTACCTATGGATCCCTTTCGATGCGCTTGAGACCTT CCTCCCCAAGGACAGCTCGCAGAGAAACGAGTACGAATCCGACATAGGGCACAAGATCGAGAACGTGATCAGCCACGAAGGCGCCCAAAGGATGGAGAGG CTAGAGTCAGGGGCGAAGCTCTGCCAAAGGATGAAGAATGTGGGGTTCTCCAGCATCACGTTCTACGAGGACACGATCAAGGAAGTCAAGTCGTTGCTCG ATGAGCACGCTAGCGGGTGGGGGATGAAGAAAGAGGAGGACATGCTTGTGCTCACTTGGAAAGGTCATAACTCTGTCTTCGCCACGACTTGGGTACCTGG CGGTGGGTTAGATCAGGAATGA
AA sequence Show only first row Show all	>Lus10039709 pacid=23165116 polypeptide=Lus10039709 locus=Lus10039709.g ID=Lus10039709.BGIv1.0 annot-version=v1.0 MKTEFRANPSSISLQTPNKNLFTSPTPPQPSPPPSAGISGALNGCSLGSLDGACIEKLLLHCASALEGKEWTLAQQVMWVLNNVASLSGDPNQRLTSWFL RALILRAAKVCPTAMHHFDSGGGGGGGGSSSASYGSRRRKMTVTELAGYVDLIPWHTFGFCASNGAVLKAIQGCSKVHVLDFSVTHCVQWPTLIDALAKR PEGPPSLRLTVPSIRPSVPPLLNVSCEEVGLRLSNFAKFRDVEFEFNIINGSFDPLASCIKSSSDYFHHYFESLLTSLTDPGQLSSLLREDEVIVVNCQN WLRYLSDDESSAIGSLRDEFLRTILTLNPAIVVVVDEDADLNISSLTTRITNCFNYLWIPFDALETFLPKDSSQRNEYESDIGHKIENVISHEGAQRMER LESGAKLCQRMKNVGFSSITFYEDTIKEVKSLLDEHASGWGMKKEEDMLVLTWKGHNSVFATTWVPGGGLDQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	0	1
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	1.4	0.9765
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	2.4	0.9700
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	2.8	0.9463
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	3.2	0.9545
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	3.5	0.9681
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10043360 [exp]	4.5	0.9382
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	6.0	0.9608
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	6.0	0.9408
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	7.3	0.9521
AT3G25670			Leucine-rich repeat (LRR) fami...		Lus10027239 [exp]	7.4	0.9361

Compare expression of checked genes

Lus10039709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.