Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01610 687 / 0 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT5G03340 439 / 5e-142 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 431 / 5e-139 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 431 / 6e-139 ATPase, AAA-type, CDC48 protein (.1) AT2G03670 307 / 5e-94 CDC48B cell division cycle 48B (.1) AT1G03000 234 / 7e-65 PEX6 peroxin 6 (.1) AT3G56690 221 / 2e-60 CIP111 Cam interacting protein 111 (.1) AT5G08470 212 / 4e-57 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G45000 165 / 2e-44 AAA-type ATPase family protein (.1.2) AT2G20140 166 / 3e-44 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018508 [exp] 511 / 7e-175 AT3G01610 334 / 9e-107 embryo defective 1354, cell division cycle 48C (.1) Lus10037385 [exp] 443 / 1e-143 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 437 / 5e-141 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 430 / 1e-138 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 429 / 3e-138 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 427 / 3e-137 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 367 / 4e-115 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 348 / 2e-110 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 328 / 1e-97 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G151600 [exp] 851 / 0 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G125500 [exp] 441 / 6e-143 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 439 / 4e-142 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 438 / 2e-141 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 436 / 1e-140 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 429 / 3e-138 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.001G128700 [exp] 323 / 6e-100 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.001G174100 [exp] 234 / 3e-64 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 207 / 2e-55 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.014G133000 [exp] 194 / 2e-51 AT1G03000 1165 / 0.0 peroxin 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10039722 pacid=23165047 polypeptide=Lus10039722 locus=Lus10039722.g ID=Lus10039722.BGIv1.0 annot-version=v1.0 ATGGGCAGCGGAAGAAGATTAAGCAGAGGCGGCGGTAATGGCGGACGGAGGAACCAATCACAGCTCAGGCAAGACGTGGAAGCGTGCCGGAAGAAAGACT CCACCGCCGACGATATCGTCCAACTTCTCCGCCAGCAGTCCCCCATCTACGGCCGGATGAAACAGCAAGTCCTAGCTAGAAACGTCCGCCAAATCATCGA ACCTCCACCGTCACAGTTCCGTAAGAAAATCCGGAGACCTTCGGAAGAAGAAGAGGAGGAAGAAGACGATTATGACGAAGGACGATCTTCCGTCCGTCTT AAAAAGAAGAAGAGGACCCGTGAGAGCGAGGAAGAGTTGCAGCTGCAGGAGAAGGAGGATAAGCGTTTGAGAAAATATAGCGCCAATCGATCTTCGGAGT CGGACTCGTCAGAATCTGATTCGAATTCGGAGTCGGATTCTCAATCGACGCCGTCTTCCACGTCGGAGGATGGAGAGCCTGTGTTCGACGTGACTAAGTC GTTGCTGCGACAAAGTTACACGCCGGAGAAGAACGTTGAGGTGGAGCTAGCCAGTAGTTCCAAGGATAAGGTGGCGATGCTGAATGGAAGCAATGGAGGT AAAGGTAAAGGAGGGGAAAGGGTTAGGAAATCGGAAGGTAAAGCCTTGAGCAGCGATAGCATTGAGGTTAAGGGTGGTAAAGAAGGGCCGAGGTTCAAGG ATTTTGGAGGGTTGAAGACAGTGCTGCACGAATTGGAGACTGAAGTGTTGATGCCACTTTACCATCCACAGCTGTTGCAACGCCTTGGTGTGAGGCCAGT TAGTGGGATTTTGCTTCATGGTCCGCCAGGTTGTGGGAAGACTAAACTGGCTCACGCCATTGCTAATGAGACTGGAGTTCCTTTCTACAAGATTTCAGCT ACTGAGGCTGTCTCTGGAGTGTCAGGTGCGTCGGAGGAGTATATTAGAGAGCTTTTCTCCAAAGCATATAGGACAGCACCTTCGATCATTTTCATTGACG AAATCGATGCCATTGGTTCCAAGAGGGAAAATCTACAGAGAGAGATGGAGCGAAGAATCGTGACACAGTTGATGACTTGCATGGACGAATACCATAAACT TGTGGAACCAGCTGATGATAATTCTAAGTCTAAGTCAGACAGCTCTGAGCAGCGAGGTGGGTATGTTCTGGTAATTGCAGCTACTAACAGGCCTGATTCC ATTGATTCTGCTCTAAGAAGGCCGGGAAGATTTGATCGGGAAATTATGTTGGGTGTCCCGGACAAGGATGCCAGGGTTCACATTCTTTCGGTGCTTACCA GAAAATGCACGCTCGAGGGTTCATTGGATCTTTCGCATATAGCTAGACTTACCCCTGGATTTGTCGGTGCTGATTTAGACGCCCTATGTAGCAAAGCAGG AAACCTCGCCTTGTGGAGGATTGCTGCATCGAGGAGATCCACGTTATTATCTGAAGAACTTTCATTACCTGCAGAACTTAGGGAGGACCAATGTATGGAC TGGTGGAAAACACCTTGGTCAGCCGAGGAGATTGAAAAGCTTGCCATCACAATGGCTGATTTTGAGCAAGCAGCTAAGTTGGTTCAACCATCATTAACAA GAGAAGGATTCTCTTCTATTCCCAATGTAACTTGGGAAGATGTTGGAGGACTTCAAAGCATTAGAAATGAGTTGGAGAGTTATGTAGTCCAGTGCATTAA AAATCCAATACTCTATCAGCATTTTGGAGTGTCCTCAAAGACCGGGATTTTGCTTTTCGGCCCTCCTGGCTGTGGCAAGACACTGATTGCCAAGGCTGCC GCTAATGAAGCAGGTGCTAACTTTATTCACGTCAAGGGTCCAGAGCTACTTAATAAGTACGTTGGAGAAAGTGAGCTGGCAGTTCGAAATCTATTTACCC GTGCAAGGCATTGCTTACCTTGTATTATCTTCATCGACGAGGTGGATGCCTTGACGACAACCCGTGGGAGAGAAGGCGGATGGGTTGTCGAACGGCCATT AAACCAGTTGCTTATAGAGCTGGACGGTGCAGACCAGCGGCAAGGTGTTTTCGTGATTGGTGCAACCAACAGGCCTGAAGTTATGGACTCGGCTATCCTG AGGCCTGGCAGGTTAGGCAACCACGTTCTAGTTCCTCTCCCAAGTGCCGAGGATCGCGGCCTGATCTTGAAGGCTCTCGCTAGGGGGAAGCCTCTCGATC CGAGCGTAGACTTAGCTGCGATAGGAAAGATGGAAGCTTGCGAAAAGTTAAGCGGGGCGGATCTCAACAAGCTGATGGAAGATGCTGCGATGATAGCTCT TCAGGAGGCGATGAAAATGGGGAGTACAGACGAGGAGATGATGTCGCTCTGCAGAATCAAAATGAGTCATCTCGAGCAGGCGCTGAAGCAGACCTCACCG TCCGTTACTAGCATGCAAGTTAAGTTCTACGAGACCTGGTCGAAACAATTCAGTGGAAGATCGTAG
AA sequence Show only first row Show all	>Lus10039722 pacid=23165047 polypeptide=Lus10039722 locus=Lus10039722.g ID=Lus10039722.BGIv1.0 annot-version=v1.0 MGSGRRLSRGGGNGGRRNQSQLRQDVEACRKKDSTADDIVQLLRQQSPIYGRMKQQVLARNVRQIIEPPPSQFRKKIRRPSEEEEEEEDDYDEGRSSVRL KKKKRTRESEEELQLQEKEDKRLRKYSANRSSESDSSESDSNSESDSQSTPSSTSEDGEPVFDVTKSLLRQSYTPEKNVEVELASSSKDKVAMLNGSNGG KGKGGERVRKSEGKALSSDSIEVKGGKEGPRFKDFGGLKTVLHELETEVLMPLYHPQLLQRLGVRPVSGILLHGPPGCGKTKLAHAIANETGVPFYKISA TEAVSGVSGASEEYIRELFSKAYRTAPSIIFIDEIDAIGSKRENLQREMERRIVTQLMTCMDEYHKLVEPADDNSKSKSDSSEQRGGYVLVIAATNRPDS IDSALRRPGRFDREIMLGVPDKDARVHILSVLTRKCTLEGSLDLSHIARLTPGFVGADLDALCSKAGNLALWRIAASRRSTLLSEELSLPAELREDQCMD WWKTPWSAEEIEKLAITMADFEQAAKLVQPSLTREGFSSIPNVTWEDVGGLQSIRNELESYVVQCIKNPILYQHFGVSSKTGILLFGPPGCGKTLIAKAA ANEAGANFIHVKGPELLNKYVGESELAVRNLFTRARHCLPCIIFIDEVDALTTTRGREGGWVVERPLNQLLIELDGADQRQGVFVIGATNRPEVMDSAIL RPGRLGNHVLVPLPSAEDRGLILKALARGKPLDPSVDLAAIGKMEACEKLSGADLNKLMEDAAMIALQEAMKMGSTDEEMMSLCRIKMSHLEQALKQTSP SVTSMQVKFYETWSKQFSGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Lus10039722 [exp]	0	1
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10028413 [exp]	1.4	0.9376
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	4.9	0.8982
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10043154 [exp]	6.5	0.9141
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	7.0	0.9011
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	10.7	0.9184
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	14.1	0.8669
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019081 [exp]	14.2	0.8137
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012070 [exp]	16.2	0.8753
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10011317 [exp]	16.5	0.9057
AT2G26140		FTSH4	FTSH protease 4 (.1)		Lus10013521 [exp]	19.4	0.8852

Compare expression of checked genes

Lus10039722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.